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Updated: Apr 12, 2026

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Intestinal microbiota and allergic diseases: A systematic review
L C F L Melli1, M S do Carmo-Rodrigues2, H B Araújo-Filho1
1Division of Pediatric Gastroenterology, Department of Pediatrics, Federal University of São Paulo/UNIFESP, São Paulo, Brazil; Biological and Health Sciences Department, University Center UNIFIEO, Osasco, São Paulo, Brazil.
Intestinal microbiota imbalances are linked to allergies. This review of studies since 2007 found distinct microbial patterns in children prone to or experiencing allergic diseases.
Area of Science:
- Microbiology
- Immunology
- Allergy Research
Background:
- Intestinal microbiota imbalances are increasingly implicated in allergic disease development.
- Previous studies (pre-2007) suggested correlations but did not clearly distinguish protective vs. risk-associated microbes.
Purpose of the Study:
- To review studies published since 2007 focusing on intestinal microbiota composition in allergic diseases.
- To identify specific microbial signatures associated with allergy development and manifestation.
Main Methods:
- Systematic literature review of studies published from 2007 onwards.
- Exclusion of studies involving clinical interventions before stool sample collection.
- Analysis of identified studies for microbial composition in early-life and symptomatic allergic children.
Main Results:
- Early-life microbiota in children who developed allergies showed lower diversity, a Firmicutes predominance, higher Bacteroidaceae, and specific shifts in anaerobic bacteria (e.g., increased B. fragilis, E. coli; decreased B. adolescentis, Lactobacillus).
- Microbiota at allergy onset revealed higher Bacteroides counts, lower beneficial bacteria (e.g., A. muciniphila, F. prausnitzii), and altered prevalence of Bifidobacterium and Staphylococcus species, alongside reduced overall bacterial diversity.
Conclusions:
- Specific intestinal microbial profiles are associated with the development and onset of allergic diseases in children.
- Further research is needed to elucidate the causal roles of these microbial shifts and to identify potential protective or pathogenic microorganisms.
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