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Updated: Apr 12, 2026

VDJ-Seq: Deep Sequencing Analysis of Rearranged Immunoglobulin Heavy Chain Gene to Reveal Clonal Evolution Patterns of B Cell Lymphoma
Published on: December 28, 2015
Congenital defects in V(D)J recombination
1Laboratory of Genome Dynamics in the Immune System, INSERM UMR1163, Université Paris Descartes Sorbonne Paris Cité, Institut Imagine, Paris, France devillartay@gmail.com.
V(D)J recombination, crucial for immune diversity, involves DNA double-strand breaks repaired by non-homologous end joining (NHEJ). Defects lead to severe combined immune deficiency (SCID), highlighting the importance of understanding these DNA repair pathways.
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- V(D)J recombination generates immune repertoire diversity in T and B lymphocytes.
- This process involves DNA double-strand breaks (DNA-DSBs) created by Rag1/2 factors.
- DNA-DSBs are repaired by the non-homologous end joining (NHEJ) pathway, acting as a lymphoid development checkpoint.
Purpose of the Study:
- To explore the role of NHEJ factors in V(D)J recombination and DNA repair.
- To investigate the implications of Rag1/2 factors in the DNA repair phase of V(D)J recombination.
- To understand the complete picture of DNA-DSB repair in V(D)J recombination.
Main Methods:
- Molecular studies of severe combined immune deficiency (SCID) patients.
- Analysis of mutations in genes like PRKDC and DNA Ligase IV.
- Comparative studies in mice examining NHEJ factor functions.
Main Results:
- V(D)J recombination relies on NHEJ for DNA-DSB repair.
- Artemis and XLF/Cernunnos are key NHEJ factors identified in SCID patients.
- Mutations in PRKDC and DNA Ligase IV also cause SCID.
Conclusions:
- XLF/Cernunnos is dispensable for V(D)J recombination in lymphoid cells but crucial for genotoxic DNA-DSB repair.
- The role of Rag1/2 factors in the DNA repair phase of V(D)J recombination requires further investigation.
- New NHEJ factors like PAXX are emerging, and complete understanding of DNA-DSB repair in V(D)J recombination is still developing.
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