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Published on: October 27, 2014
Pharmacoethnicity in Paclitaxel-Induced Sensory Peripheral Neuropathy
Masaaki Komatsu1, Heather E Wheeler1, Suyoun Chung2
1Section of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, Illinois.
Purpose:
Paclitaxel is used worldwide in the treatment of breast, lung, ovarian, and other cancers. Sensory peripheral neuropathy is an associated adverse effect that cannot be predicted, prevented, or mitigated. To better understand the contribution of germline genetic variation to paclitaxel-induced peripheral neuropathy, we undertook an integrative approach that combines genome-wide association study (GWAS) data generated from HapMap lymphoblastoid cell lines (LCL) and Asian patients.
Methods:
GWAS was performed with paclitaxel-induced cytotoxicity generated in 363 LCLs and with paclitaxel-induced neuropathy from 145 Asian patients. A gene-based approach was used to identify overlapping genes and compare with a European clinical cohort of paclitaxel-induced neuropathy. Neurons derived from human-induced pluripotent stem cells were used for functional validation of candidate genes.
Results:
SNPs near AIPL1 were significantly associated with paclitaxel-induced cytotoxicity in Asian LCLs (P < 10(-6)). Decreased expression of AIPL1 resulted in decreased sensitivity of neurons to paclitaxel by inducing neurite morphologic changes as measured by increased relative total outgrowth, number of processes and mean process length. Using a gene-based analysis, there were 32 genes that overlapped between Asian LCL cytotoxicity and Asian patient neuropathy (P < 0.05), including BCR. Upon BCR knockdown, there was an increase in neuronal sensitivity to paclitaxel as measured by neurite morphologic characteristics.
Conclusions:
We identified genetic variants associated with Asian paclitaxel-induced cytotoxicity and functionally validated the AIPL1 and BCR in a neuronal cell model. Furthermore, the integrative pharmacogenomics approach of LCL/patient GWAS may help prioritize target genes associated with chemotherapeutic-induced peripheral neuropathy.
Insights
Genetic variations influence paclitaxel-induced peripheral neuropathy. This study identified AIPL1 and BCR genes associated with paclitaxel sensitivity, offering insights into predicting and preventing this common chemotherapy side effect.
Area of Science:
- Pharmacogenomics
- Neuroscience
- Oncology
Background:
- Paclitaxel is a vital chemotherapy agent for various cancers, but its use is limited by unpredictable sensory peripheral neuropathy.
- Identifying genetic factors influencing neuropathy risk is crucial for personalized cancer treatment.
Purpose of the Study:
- To investigate the role of germline genetic variations in paclitaxel-induced peripheral neuropathy using an integrative approach.
- To identify and functionally validate genes contributing to paclitaxel cytotoxicity and neuropathy.
Main Methods:
- Genome-wide association studies (GWAS) were conducted on paclitaxel-induced cytotoxicity in lymphoblastoid cell lines (LCLs) and neuropathy in Asian patients.
- A gene-based analysis identified overlapping genes between LCL cytotoxicity and patient neuropathy, with comparisons to a European cohort.
- Human-induced pluripotent stem cell-derived neurons were used for functional validation of candidate genes like AIPL1 and BCR.
Main Results:
- Single nucleotide polymorphisms (SNPs) near AIPL1 were significantly associated with paclitaxel-induced cytotoxicity in Asian LCLs.
- Decreased AIPL1 expression reduced neuronal sensitivity to paclitaxel, altering neurite morphology.
- A gene-based analysis revealed 32 overlapping genes, including BCR, between Asian LCL cytotoxicity and patient neuropathy. BCR knockdown increased neuronal sensitivity to paclitaxel.
Conclusions:
- Genetic variants associated with paclitaxel-induced cytotoxicity in Asian populations were identified.
- AIPL1 and BCR were functionally validated as key genes influencing neuronal response to paclitaxel.
- An integrative pharmacogenomics approach combining LCL and patient GWAS can prioritize genes for chemotherapeutic-induced peripheral neuropathy research.
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