Related Experiment Video
Updated: Apr 11, 2026

Author Spotlight: Oxygen-Independent Assays to Measure Mitochondrial Function in Mammals
Published on: May 19, 2023
Low micromolar concentrations of the superoxide probe MitoSOX uncouple neural mitochondria and inhibit complex IV
Brian A Roelofs1, Shealinna X Ge2, Paige E Studlack3
1Department of Anesthesiology and Center for Shock, Trauma and Anesthesiology Research (STAR); Department of Biochemistry and Molecular Biology.
Abstract:
MitoSOX Red is a fluorescent probe used for the detection of mitochondrial reactive oxygen species by live cell imaging. The lipophilic, positively charged triphenylphosphonium moiety within MitoSOX concentrates the superoxide-sensitive dihydroethidium conjugate within the mitochondrial matrix. Here we investigated whether common MitoSOX imaging protocols influence mitochondrial bioenergetic function in primary rat cortical neurons and microglial cell lines. MitoSOX dose-dependently uncoupled neuronal respiration, whether present continuously in the assay medium or washed following a ten minute loading protocol. Concentrations of 5-10μM MitoSOX caused severe loss of ATP synthesis-linked respiration. Redistribution of MitoSOX to the cytoplasm and nucleus occurred concomitant to mitochondrial uncoupling. MitoSOX also dose-dependently decreased the maximal respiration rate and this impairment could not be rescued by delivery of a complex IV specific substrate, revealing complex IV inhibition. As in neurons, loading microglial cells with MitoSOX at low micromolar concentrations resulted in uncoupled mitochondria with reduced respiratory capacity whereas submicromolar MitoSOX had no adverse effects. The MitoSOX parent compound dihydroethidium also caused mitochondrial uncoupling and respiratory inhibition at low micromolar concentrations. However, these effects were abrogated by pre-incubating dihydroethidium with cation exchange beads to remove positively charged oxidation products, which would otherwise by sequestered by polarized mitochondria. Collectively, our results suggest that the matrix accumulation of MitoSOX or dihydroethidium oxidation products causes mitochondrial uncoupling and inhibition of complex IV. Because MitoSOX is inherently capable of causing severe mitochondrial dysfunction with the potential to alter superoxide production, its use therefore requires careful optimization in imaging protocols.
Insights
MitoSOX Red imaging protocols can impair mitochondrial function in neurons and microglia. Careful optimization is needed, as MitoSOX and its parent compound can cause mitochondrial uncoupling and complex IV inhibition.
Area of Science:
- Cell Biology
- Neuroscience
- Biochemistry
Background:
- MitoSOX Red is a fluorescent probe for detecting mitochondrial reactive oxygen species.
- Its design facilitates mitochondrial matrix accumulation via a lipophilic, positively charged moiety.
Purpose of the Study:
- To investigate the impact of MitoSOX imaging protocols on mitochondrial bioenergetic function.
- To assess effects in primary rat cortical neurons and microglial cell lines.
Main Methods:
- Dose-dependent assessment of MitoSOX Red and dihydroethidium on cellular respiration.
- Measurement of ATP synthesis-linked respiration and maximal respiration rates.
- Investigation of complex IV activity and compound localization within cells.
Main Results:
- MitoSOX Red dose-dependently uncoupled neuronal respiration and reduced ATP synthesis.
- MitoSOX Red inhibited maximal respiration, indicating complex IV impairment.
- Similar effects were observed in microglial cells, with submicromolar concentrations showing no adverse effects.
- Dihydroethidium also caused mitochondrial dysfunction, which was mitigated by removing charged oxidation products.
Conclusions:
- Matrix accumulation of MitoSOX or dihydroethidium oxidation products leads to mitochondrial uncoupling and complex IV inhibition.
- MitoSOX Red can inherently cause mitochondrial dysfunction, necessitating careful optimization of imaging protocols.
- The findings highlight potential artifacts in superoxide detection using MitoSOX.
Related Concept Videos
The Electron Transport Chain
Inhibitors of the electron transport chain
Rotenone, a widely used pesticide, prevents electron transfer from Fe-S cluster to ubiquinone or Q...
Electron Transport Chain: Complex I and II
ROS generation is regulated and maintained at moderate levels necessary...
Electron Transport Chain: Complex III and IV
The Supercomplexes in the Crista Membrane
Mitochondrial Membranes
Mitochondrial Membranes

