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Updated: Apr 11, 2026

Production, Crystallization, and Structure Determination of the IKK-binding Domain of NEMO
Published on: December 28, 2019
IPO3-mediated Nonclassical Nuclear Import of NF-κB Essential Modulator (NEMO) Drives DNA Damage-dependent NF-κB
Byounghoon Hwang1, Kevin McCool2, Jun Wan3
1Department of Oncology, University of Wisconsin, Madison, Wisconsin.
Abstract:
Activation of IκB kinase (IKK) and NF-κB by genotoxic stresses modulates apoptotic responses and production of inflammatory mediators, thereby contributing to therapy resistance and premature aging. We previously reported that genotoxic agents induce nuclear localization of NF-κB essential modulator (NEMO) via an undefined mechanism to arbitrate subsequent DNA damage-dependent IKK/NF-κB signaling. Here we show that a nonclassical nuclear import pathway via IPO3 (importin 3, transportin 2) mediates stress-induced NEMO nuclear translocation. We found putative nuclear localization signals in NEMO whose mutations disrupted stress-inducible nuclear translocation of NEMO and IKK/NF-κB activation in stably reconstituted NEMO-deficient cells. RNAi screening of both importin α and β family members, as well as co-immunoprecipitation analyses, revealed that a nonclassical importin β family member, IPO3, was the only importin that was able to associate with NEMO and whose reduced expression prevented genotoxic stress-induced NEMO nuclear translocation, IKK/NF-κB activation, and inflammatory cytokine transcription. Recombinant IPO3 interacted with recombinant NEMO but not the nuclear localization signal mutant version and induced nuclear import of NEMO in digitonin-permeabilized cells. We also provide evidence that NEMO is disengaged from IKK complex following genotoxic stress induction. Thus, the IPO3 nuclear import pathway is an early and crucial determinant of the IKK/NF-κB signaling arm of the mammalian DNA damage response.
Insights
Genotoxic stress triggers nuclear import of NF-κB essential modulator (NEMO) via IPO3, a nonclassical pathway. This process is crucial for DNA damage response and inflammatory signaling, impacting therapy resistance and aging.
Area of Science:
- Molecular Biology
- Cellular Signaling
- DNA Damage Response
Background:
- Genotoxic stresses activate IκB kinase (IKK) and NF-κB signaling.
- This activation influences apoptosis, inflammation, therapy resistance, and aging.
- The mechanism of NF-κB essential modulator (NEMO) nuclear localization during stress was previously undefined.
Purpose of the Study:
- To elucidate the mechanism of stress-induced nuclear translocation of NEMO.
- To identify the specific import pathway mediating NEMO's nuclear entry.
- To understand NEMO's role in the DNA damage response signaling.
Main Methods:
- Mutational analysis of putative nuclear localization signals in NEMO.
- RNAi screening of importin α and β family members.
- Co-immunoprecipitation and recombinant protein interaction assays.
- Analysis of NEMO nuclear translocation, IKK/NF-κB activation, and cytokine transcription.
Main Results:
- A nonclassical nuclear import pathway involving IPO3 (importin 3, transportin 2) mediates stress-induced NEMO nuclear translocation.
- Mutations in NEMO's nuclear localization signals disrupted stress-inducible nuclear import and IKK/NF-κB activation.
- IPO3 was identified as the sole importin associating with NEMO, and its reduced expression blocked stress-induced NEMO nuclear translocation and signaling.
- Recombinant IPO3 directly interacted with NEMO and mediated its nuclear import in vitro.
- NEMO disengages from the IKK complex upon genotoxic stress induction.
Conclusions:
- The IPO3-mediated nuclear import pathway is essential for stress-induced NEMO nuclear translocation.
- This pathway is a critical early determinant of the IKK/NF-κB signaling cascade in the mammalian DNA damage response.
- Understanding this pathway offers insights into therapy resistance and premature aging.
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