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MouseMine: a new data warehouse for MGI.

H Motenko1, S B Neuhauser, M O'Keefe

  • 1The Jackson Laboratory, Bar Harbor, ME, 04609, USA.

Mammalian Genome : Official Journal of the International Mammalian Genome Society
|June 21, 2015
PubMed
Summary
This summary is machine-generated.

MouseMine is a new data warehouse providing access to Mouse Genome Informatics data. It offers powerful analysis tools and integrates with other model organism databases for cross-species research.

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Area of Science:

  • Bioinformatics
  • Genomics
  • Computational Biology

Background:

  • Mouse Genome Informatics (MGI) is a primary source of mouse genetic and phenotypic data.
  • Accessing and integrating diverse biological datasets is crucial for advancing research.
  • Existing data access methods may limit comprehensive analysis and cross-species comparisons.

Purpose of the Study:

  • To introduce MouseMine, a novel data warehouse for Mouse Genome Informatics (MGI) data.
  • To highlight MouseMine's capabilities for querying, reporting, and analyzing mouse data.
  • To discuss the integration of MouseMine within the broader InterMine community and MGI.

Main Methods:

  • Utilizing the InterMine software framework to build the MouseMine data warehouse.
  • Developing a comprehensive Web Services layer for data integration and programmatic access.
  • Designing features for saving, combining query results, and workflow integration.

Main Results:

  • MouseMine provides powerful query, reporting, and analysis functionalities for MGI data.
  • Users can access and integrate a significant portion of MGI data in novel ways.
  • MouseMine is part of a growing network of InterMine-based resources, facilitating cross-species data analysis.

Conclusions:

  • MouseMine enhances access to and utility of MGI mouse data.
  • The InterMine framework enables powerful data integration and analysis capabilities.
  • Collaboration and standardized data representation are key for advancing cross-species research.