GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications
Matthew R Laird1, Morgan G I Langille2, Fiona S L Brinkman1
1Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6 and.
Bioinformatics (Oxford, England)
|June 21, 2015
Summary
GenomeD3Plot offers interactive genome visualization tools, enabling researchers to dynamically explore complex genomic data. This JavaScript library facilitates data manipulation and export for publications.
Area of Science:
- Bioinformatics
- Genomics
- Data Visualization
Background:
- Static genome images are limiting for researchers.
- Interactive, dynamic tools are expected in modern web applications.
- GenomeD3Plot addresses this need with a lightweight JavaScript library.
Purpose of the Study:
- To introduce GenomeD3Plot, a novel JavaScript library for genomic data visualization.
- To provide researchers with interactive tools for exploring complex genomic datasets.
- To enable dynamic alteration, resizing, and repositioning of genome visualizations.
Main Methods:
- Developed using JavaScript and the D3 library.
- Utilizes a standards-based JSON configuration file for data input.
- Offers a rich API for rapid visualization of genomic data.
Main Results:
- GenomeD3Plot is integrated into Islandviewer 3 for visualizing genomic islands.
- The library allows dynamic interaction with genomic data.
- Visualizations can be exported in PNG or SVG formats.
Conclusions:
- GenomeD3Plot provides a versatile solution for dynamic genomic data visualization.
- Its features enhance data exploration and integration into web services.
- The library supports easy inclusion of visualizations in manuscripts and presentations.
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