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Updated: Apr 9, 2026

Identification of Protein Interaction Partners in Mammalian Cells Using SILAC-immunoprecipitation Quantitative Proteomics
Published on: July 6, 2014
Identification of Tpr and α-actinin-4 as two novel SLK-interacting proteins
Aala Jaberi1, Erika Hooker1, Julie Guillemette1
1Department of Medicine, McGill University Health Centre, McGill University, Montreal, Quebec H4A 3J1, Canada.
Abstract:
Expression and activity of the Ste20-like kinase, SLK, are increased during kidney development and recovery from ischemia-reperfusion injury. SLK mediates apoptosis in various cells, and can regulate cell cycle progression and cytoskeletal remodeling. In cells, SLK is detected in a high molecular mass complex, suggesting that SLK is a dimer/oligomer, or is in tight association with other proteins. To better understand the regulation, localization and function of SLK, we sought to identify proteins in this high molecular mass complex. Analysis by mass spectroscopy identified the nucleoporin, translocated promoter region (Tpr), and the cytoskeletal protein, α-actinin-4, as potential SLK-interacting proteins. Using a protein complementation assay, we showed that the 350 amino acid C-terminal, coiled-coil domain of SLK was responsible for homodimerization, as well as interaction with Tpr and α-actinin-4. The association of SLK with Tpr and α-actinin-4, respectively, was confirmed by co-immunoprecipitation. Subsets of total cellular SLK colocalized with Tpr at the nuclear envelope, and α-actinin-4 in the cytoplasm. Expression of Tpr attenuated activation-specific autophosphorylation of SLK, and blocked SLK-induced apoptosis and AP-1 activity. In contrast to the effect of Tpr, autophosphorylation of SLK was not affected by α-actinin-4. Thus, SLK interacts with Tpr and α-actinin-4 in cells, and these protein-protein interactions may control the subcellular localization and the biological activity of SLK.
Insights
The Ste20-like kinase (SLK) interacts with translocated promoter region (Tpr) and α-actinin-4. These interactions influence SLK
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- Ste20-like kinase (SLK) activity increases during kidney development and injury recovery.
- SLK regulates apoptosis, cell cycle, and cytoskeletal remodeling.
- SLK exists in a high molecular mass complex, suggesting protein interactions.
Purpose of the Study:
- Identify proteins interacting with SLK in its high molecular mass complex.
- Elucidate the role of these interactions in SLK regulation and function.
Main Methods:
- Mass spectrometry to identify SLK-interacting proteins.
- Protein complementation assays to confirm interactions and identify binding domains.
- Co-immunoprecipitation to validate SLK-Tpr and SLK-α-actinin-4 associations.
- Confocal microscopy to determine subcellular colocalization.
Main Results:
- Translocated promoter region (Tpr) and α-actinin-4 were identified as SLK-interacting proteins.
- The C-terminal coiled-coil domain of SLK mediates homodimerization and interaction with Tpr and α-actinin-4.
- SLK colocalizes with Tpr at the nuclear envelope and α-actinin-4 in the cytoplasm.
- Tpr expression attenuated SLK autophosphorylation, apoptosis, and AP-1 activity, while α-actinin-4 did not affect SLK autophosphorylation.
Conclusions:
- SLK interacts with Tpr and α-actinin-4.
- These interactions potentially regulate SLK's subcellular localization and biological activity.
- Tpr's interaction with SLK may inhibit its pro-apoptotic and signaling functions.
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