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Updated: Apr 8, 2026

Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Evaluation of targeted therapies in advanced breast cancer: the need for large-scale molecular screening and
Z Fadoukhair1,2, D Zardavas3, M A Chad2,4
1Department of Medical Oncology, National Institute of Oncology, Rabat, Morocco.
Abstract:
Breast cancer (BC) has been classified into four intrinsic subtypes through seminal studies employing gene expression profiling analysis of primary tumours, namely the luminal A and B subtypes, the human epidermal growth factor receptor 2-like subtype and the basal-like subtype. More recently, the emergence of high-throughput genomic sequencing techniques, such as next-generation or massive parallel sequencing has expanded our understanding of the complex genomic landscapes of BC, with marked intertumour heterogeneity seen among different patients. In addition, increasing evidence indicates intratumour heterogeneity, with molecular differences observed within one patient, both spatially and longitudinally. These phenomena have an impact on the clinical development of molecularly targeted agents, with the classical paradigm of population-based clinical trials being no longer efficient. In the era of genomically driven oncology, three complementary tools can accelerate the clinical development of targeted agents for advanced BC as follows: (i) the implementation of molecular profiling of metastatic tumour lesions, as exemplified by the AURORA (Aiming to Understand the Molecular Aberrations in Metastatic Breast Cancer) programme; (ii) serial assessments of circulating tumour DNA, allowing a more thorough molecular interrogation of metastatic tumour burden; and (iii) new innovative clinical trial designs able to address the challenges of the increasing molecular fragmentation of BC.
Insights
Understanding breast cancer (BC) subtypes and heterogeneity is crucial. New tools like molecular profiling and circulating tumor DNA analysis are vital for developing targeted therapies for advanced BC.
Area of Science:
- Oncology
- Genomics
- Molecular Biology
Background:
- Breast cancer (BC) is classified into four intrinsic subtypes based on gene expression profiling.
- High-throughput genomic sequencing reveals significant intertumour and intratumour heterogeneity in BC.
- This heterogeneity challenges traditional population-based clinical trial designs for targeted therapies.
Purpose of the Study:
- To address the challenges posed by BC heterogeneity in the development of targeted agents.
- To highlight novel approaches for accelerating targeted therapy development in advanced BC.
Main Methods:
- Implementation of molecular profiling of metastatic tumor lesions (e.g., AURORA program).
- Serial assessments of circulating tumor DNA (ctDNA) for comprehensive molecular interrogation.
- Adoption of innovative clinical trial designs tailored to molecularly fragmented BC.
Main Results:
- Genomic sequencing has expanded the understanding of BC's complex landscape.
- Evidence supports both intertumour and intratumour heterogeneity in BC.
- Classical clinical trial paradigms are insufficient for targeted agent development.
Conclusions:
- Molecular profiling of metastatic lesions is a key tool.
- ctDNA analysis offers deeper insights into metastatic tumor burden.
- Innovative trial designs are essential for genomically driven oncology in advanced BC.
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