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Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
Intra-tumor heterogeneity of BRAF V600E mutation in lung adenocarcinomas
Tsutomu Tatematsu1, Hidefumi Sasaki1, Shigeki Shimizu2
1Department of Oncology, Immunology and Surgery, Nagoya City University Graduate School of Medical Sciences, Nagoya 467-8601, Japan.
Abstract:
BRAF mutations exist in numerous types of cancer, including melanomas, colorectal cancers and lung cancers. The V600E-specific inhibitor vemurafenib has marked clinical activity in patients with BRAF V600E-mutated melanoma. However, there are many cases of resistance to vemurafenib. This may be due to the reported intra-tumor heterogeneity of the BRAF V600E mutation in primary melanomas. BRAF mutations are found in 1-5% of non-small cell carcinomas (NSCLCs), almost exclusively in adenocarcinoma. A few cases have been reported in which vemurafenib was effective against BRAF V600E-mutated lung cancers. In a previous study, five lung adenocarcinomas with BRAF V600E mutation were detected by direct sequencing. The present study analyzed these tumors for the percentage of mutation (%mutation) by competitive allele-specific polymerase chain reaction (CAST-PCR) assay. In addition, sections of all components of the adenocarcinomas were obtained by laser microdissection and analyzed. The %mutations of BRAF V600E within the macrodissected tumors (cases 1-5) were: Case 1, 10.0%; case 2, 8.0%; case 3, 8.9%; case 4, 21.5%; and case 5, 14.9%. In four cases (cases 2-5), the %mutations of each adenocarcinoma component were as follows: Case 2, lepidic growth 6.5-24.5%, papillary 1.3-11.2% and acinar 9.8%; case 3, solid 2.5-69.9%, acinar 12.4-27.1% and papillary 3.7-17.4%; case 4, acinar 10.0-45.0% and papillary 44.0%; and case 5, papillary 3.7-93.4%. Sensitive BRAF mutation detection methods were used and evidence for heterogeneity of the BRAF V600E mutation in these lung adenocarcinoma cases was observed. Targeted therapy with a BRAF V600E inhibitor such as vemurafenib may have potential in the treatment of lung cancer with this mutation; however, it is necessary to consider how the treatment effect of and drug resistance to BRAF V600E inhibitors are affected by the presence of heterogeneity in future studies.
Insights
BRAF V600E mutations are found in lung adenocarcinoma, but resistance to vemurafenib may occur due to tumor heterogeneity. This study quantified BRAF V600E mutation percentages in lung adenocarcinoma components, revealing significant heterogeneity.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- BRAF V600E mutations are prevalent in various cancers, including melanoma and lung adenocarcinoma.
- Vemurafenib, a BRAF V600E inhibitor, shows efficacy in melanoma but faces resistance, potentially due to intra-tumor heterogeneity.
- BRAF mutations occur in 1-5% of non-small cell lung carcinomas, predominantly in adenocarcinoma.
Purpose of the Study:
- To analyze the percentage of BRAF V600E mutation (%mutation) in five lung adenocarcinoma cases.
- To investigate the heterogeneity of BRAF V600E mutations within different components of lung adenocarcinomas.
- To assess the implications of BRAF V600E heterogeneity for targeted therapy with inhibitors like vemurafenib.
Main Methods:
- Direct sequencing was used in a prior study to detect BRAF V600E mutations in five lung adenocarcinomas.
- Competitive allele-specific polymerase chain reaction (CAST-PCR) assay was employed to quantify the %mutation of BRAF V600E.
- Laser microdissection was utilized to isolate and analyze distinct adenocarcinoma components for mutation analysis.
Main Results:
- The %mutation of BRAF V600E in macrodissected tumors ranged from 8.0% to 21.5%.
- Analysis of adenocarcinoma components revealed significant heterogeneity in BRAF V600E %mutation, with variations observed across different histological subtypes (e.g., lepidic, papillary, acinar, solid).
- Specific examples of heterogeneity include a range of 6.5-24.5% in lepidic growth and 3.7-93.4% in papillary components across different cases.
Conclusions:
- Evidence of BRAF V600E mutation heterogeneity was observed in the analyzed lung adenocarcinoma cases.
- Targeted therapy with BRAF V600E inhibitors like vemurafenib holds potential for lung cancer treatment.
- Future studies must consider the impact of BRAF V600E heterogeneity on treatment efficacy and drug resistance.
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