Related Experiment Video
Updated: Apr 7, 2026

X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
Published on: May 13, 2020
Structure of the catalytic phosphatase domain of MTMR8: implications for dimerization, membrane association and
Ki Young Yoo1, Ji Young Son1, Jee Un Lee1
1Department of Chemistry, Konkuk University, 1 Hwayang-dong, Gwangjin-gu, Seoul 143-701, Republic of Korea.
Abstract:
Myotubularin-related proteins are a large family of phosphoinositide phosphatases; their activity, stability and subcellular localization are regulated by dimeric interactions with other members of the family. Here, the crystal structure of the phosphatase domain of MTMR8 is reported. Conformational deviation of the two loops that mediate interaction with the PH-GRAM domain suggests that the PH-GRAM domain interacts differently with the phosphatase domain of each MTMR member. The protein exists as a dimer with twofold symmetry, providing insight into a novel mode of dimerization mediated by the phosphatase domain. Structural comparison and mutation studies suggest that Lys255 of MTMR8 interacts with the substrate diacylglycerol moiety, similar to Lys333 of MTMR2, although the positions of these residues are different. The catalytic activity of the MTMR8 phosphatase domain is inhibited by oxidation and is reversibly reactivated by reduction, suggesting the presence of an oxidation-protective intermediate other than a disulfide bond owing to the absence of a cysteine within a disulfide-bond distance from Cys338.
Insights
The crystal structure of MTMR8 reveals a novel dimerization mode for myotubularin-related proteins. This research clarifies how MTMR8
Area of Science:
- Biochemistry
- Structural Biology
- Molecular Biology
Background:
- Myotubularin-related proteins (MTMRs) are phosphoinositide phosphatases regulating cellular functions through dimerization.
- Understanding MTMR family interactions is crucial for elucidating their roles in various biological processes.
Purpose of the Study:
- To determine the crystal structure of the phosphatase domain of MTMR8.
- To investigate the dimerization mechanism and substrate interaction of MTMR8.
- To explore the regulation of MTMR8 catalytic activity.
Main Methods:
- X-ray crystallography to obtain the structure of the MTMR8 phosphatase domain.
- Structural comparison with other MTMR family members.
- Site-directed mutagenesis studies to probe residue function.
- Biochemical assays to assess catalytic activity and regulation.
Main Results:
- The crystal structure reveals a novel twofold symmetric dimer of the MTMR8 phosphatase domain.
- Conformational differences in interaction loops suggest distinct PH-GRAM domain binding across MTMR family members.
- Lys255 in MTMR8 interacts with the diacylglycerol substrate, analogous to MTMR2, despite different positioning.
- MTMR8 catalytic activity is inhibited by oxidation and restored by reduction, indicating a non-disulfide bond protective mechanism.
Conclusions:
- The MTMR8 crystal structure provides insights into a unique dimerization interface within the MTMR family.
- Structural variations highlight differential interactions with the PH-GRAM domain among MTMR proteins.
- MTMR8 activity is redox-sensitive, regulated by an oxidation-protective mechanism independent of disulfide bonds.
Related Concept Videos
The Inner Mitochondrial Membrane
The Supercomplexes in the Crista Membrane
Structure of Porins
Mitochondrial Membranes
Translocation of Proteins into the Mitochondria
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
Protein Kinases and Phosphatases
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...

