Structure of the catalytic phosphatase domain of MTMR8: implications for dimerization, membrane association and

Ki Young Yoo1, Ji Young Son1, Jee Un Lee1

  • 1Department of Chemistry, Konkuk University, 1 Hwayang-dong, Gwangjin-gu, Seoul 143-701, Republic of Korea.

Insights

The crystal structure of MTMR8 reveals a novel dimerization mode for myotubularin-related proteins. This research clarifies how MTMR8

Area of Science:

  • Biochemistry
  • Structural Biology
  • Molecular Biology

Background:

  • Myotubularin-related proteins (MTMRs) are phosphoinositide phosphatases regulating cellular functions through dimerization.
  • Understanding MTMR family interactions is crucial for elucidating their roles in various biological processes.

Purpose of the Study:

  • To determine the crystal structure of the phosphatase domain of MTMR8.
  • To investigate the dimerization mechanism and substrate interaction of MTMR8.
  • To explore the regulation of MTMR8 catalytic activity.

Main Methods:

  • X-ray crystallography to obtain the structure of the MTMR8 phosphatase domain.
  • Structural comparison with other MTMR family members.
  • Site-directed mutagenesis studies to probe residue function.
  • Biochemical assays to assess catalytic activity and regulation.

Main Results:

  • The crystal structure reveals a novel twofold symmetric dimer of the MTMR8 phosphatase domain.
  • Conformational differences in interaction loops suggest distinct PH-GRAM domain binding across MTMR family members.
  • Lys255 in MTMR8 interacts with the diacylglycerol substrate, analogous to MTMR2, despite different positioning.
  • MTMR8 catalytic activity is inhibited by oxidation and restored by reduction, indicating a non-disulfide bond protective mechanism.

Conclusions:

  • The MTMR8 crystal structure provides insights into a unique dimerization interface within the MTMR family.
  • Structural variations highlight differential interactions with the PH-GRAM domain among MTMR proteins.
  • MTMR8 activity is redox-sensitive, regulated by an oxidation-protective mechanism independent of disulfide bonds.

Related Concept Videos

The Inner Mitochondrial Membrane01:28

The Inner Mitochondrial Membrane

The inner mitochondrial membrane is the primary site of ATP synthesis. The inner membrane domain that forms a smooth layer adjacent to the outer membrane is called the inner boundary membrane. This domain contains membrane transporters that drive metabolites in and out of the mitochondria.  In contrast, the inner membrane network that invaginates into the matrix space is called the cristae membrane. This domain accounts for principle mitochondrial function as it accommodates the protein...
5.1K
The Supercomplexes in the Crista Membrane01:41

The Supercomplexes in the Crista Membrane

The mitochondrial cristae membrane is the primary site for the oxidative phosphorylation (OXPHOS) process of energy conversion mediated through respiratory complexes I to V. These complexes have been widely studied for decades, and it has been proven that they form supramolecular structures called respiratory supercomplexes (SC). These higher-order complexes may be crucial in maintaining the biochemical structure and improving the physiological activity of the individual complexes while...
3.2K
Structure of Porins01:21

Structure of Porins

Mitochondria, chloroplasts, and gram-negative bacteria have transmembrane, beta-barrel proteins called porins to mediate the free diffusion of ions and metabolites across the membrane. Mitochondrial porin precursors contain conserved amino acid sequences called beta signals at their C-terminal. Beta signals have a  motif of PoXGXXHyXHy (Po-Polar, X-Any amino acid, G-Glycine, Hy-LargeHydrophobic), which are crucial for precursor recognition to initiate precursor assembly. Beta-barrel...
4.2K
Mitochondrial Membranes01:45

Mitochondrial Membranes

A single mitochondrion is a bean-shaped organelle enclosed by a double-membrane system. The outer membrane of mitochondria is smooth and contains many porins - the integral membrane transporters. Porins enable free diffusion of ions and small uncharged molecules through the outer mitochondrial membrane but limit the transport of molecules larger than 5000 Daltons. Further, the outer mitochondrial membrane forms a unique structure called membrane contact sites with other subcellular organelles,...
17.9K
Translocation of Proteins into the Mitochondria01:19

Translocation of Proteins into the Mitochondria

Mitochondrial precursors are translocated to the internal subcompartments via independent mechanisms involving distinct protein machineries called translocases.
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
13.7K
Protein Kinases and Phosphatases02:54

Protein Kinases and Phosphatases

Proteins undergo chemical modifications that trigger changes in the charge, structure, and conformation of the proteins. Phosphorylation, acetylation, glycosylation, nitrosylation, ubiquitination, lipidation, methylation, and proteolysis are various protein modifications that regulate protein activity. Such modifications are usually enzyme-driven.
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
15.7K