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Updated: Apr 7, 2026

Navigating the Mass Spectrometry-Based Proteomic Data Using Free Computational Tools
Published on: August 19, 2025
FunRich proteomics software analysis, let the fun begin!
Alberto Benito-Martin1, Héctor Peinado1,2
1Children's Cancer and Blood Foundation Laboratories, Department of Pediatrics, Weill Cornell Medical College, New York, NY, USA.
Abstract:
Protein MS analysis is the preferred method for unbiased protein identification. It is normally applied to a large number of both small-scale and high-throughput studies. However, user-friendly computational tools for protein analysis are still needed. In this issue, Mathivanan and colleagues (Proteomics 2015, 15, 2597-2601) report the development of FunRich software, an open-access software that facilitates the analysis of proteomics data, providing tools for functional enrichment and interaction network analysis of genes and proteins. FunRich is a reinterpretation of proteomic software, a standalone tool combining ease of use with customizable databases, free access, and graphical representations.

