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Updated: Apr 7, 2026

Selective Depletion of Microglia from Cerebellar Granule Cell Cultures Using L-leucine Methyl Ester
Published on: July 7, 2015
Elimination of Microglia Improves Functional Outcomes Following Extensive Neuronal Loss in the Hippocampus
Rachel A Rice1, Elizabeth E Spangenberg1, Hana Yamate-Morgan1
1Department of Neurobiology and Behavior, Institute for Memory Impairments and Neurological Disorders, University of California, Irvine, California 92697, and.
Abstract:
With severe injury or disease, microglia become chronically activated and damage the local brain environment, likely contributing to cognitive decline. We previously discovered that microglia are dependent on colony-stimulating factor 1 receptor (CSF1R) signaling for survival in the healthy adult brain, and we have exploited this dependence to determine whether such activated microglia contribute deleteriously to functional recovery following a neuronal lesion. Here, we induced a hippocampal lesion in mice for 25 d via neuronal expression of diphtheria toxin A-chain, producing both a neuroinflammatory reaction and behavioral alterations. Following the 25 d lesion, we administered PLX3397, a CSF1R inhibitor, for 30 d to eliminate microglia. This post-lesion treatment paradigm improved functional recovery on elevated plus maze and Morris water maze, concomitant with reductions in elevated proinflammatory molecules, as well as normalization of lesion-induced alterations in synaptophysin and PSD-95. Further exploration of the effects of microglia on synapses in a second cohort of mice revealed that dendritic spine densities are increased with long-term microglial elimination, providing evidence that microglia shape the synaptic landscape in the adult mouse brain. Furthermore, in these same animals, we determined that microglia play a protective role during lesioning, whereby neuronal loss was potentiated in the absence of these cells. Collectively, we demonstrate that microglia exert beneficial effects during a diphtheria toxin-induced neuronal lesion, but impede recovery following insult.
Significance Statement:
It remains unknown to what degree, and by what mechanisms, chronically activated microglia contribute to cognitive deficits associated with brain insults. We induced a genetic neuronal lesion in mice for 25 d and found activated microglia to increase inflammation, alter synaptic surrogates, and impede behavioral recovery. These lesion-associated deficits were ameliorated with subsequent microglial elimination, underscoring the importance of developing therapeutics aimed at eliminating/modulating chronic microglial activation. Additionally, we found long-term microglial depletion globally increases dendritic spines by ∼35% in the adult brain, indicating that microglia continue to sculpt the synaptic landscape in the postdevelopmental brain under homeostatic conditions. Microglial manipulation can therefore be used to investigate the utility of increasing dendritic spine numbers in postnatal conditions displaying synaptic aberrations.
Insights
Eliminating chronically activated microglia after a brain lesion improved cognitive recovery and reduced inflammation. However, microglia also play a protective role during the initial injury, highlighting their complex impact on brain health.
Area of Science:
- Neuroscience
- Immunology
- Cell Biology
Background:
- Microglia, the brain's immune cells, become chronically activated after severe injury or disease, potentially causing cognitive decline.
- Colony-stimulating factor 1 receptor (CSF1R) signaling is crucial for microglial survival in the healthy adult brain.
Purpose of the Study:
- To investigate the role of chronically activated microglia in functional recovery following a neuronal lesion.
- To determine if eliminating microglia post-lesion improves cognitive function and brain environment.
Main Methods:
- A hippocampal lesion was induced in mice using diphtheria toxin A-chain for 25 days.
- A CSF1R inhibitor (PLX3397) was administered for 30 days post-lesion to eliminate microglia.
- Behavioral tests (elevated plus maze, Morris water maze), molecular analysis (proinflammatory molecules, synaptophysin, PSD-95), and dendritic spine density measurements were performed.
Main Results:
- Microglial elimination post-lesion significantly improved functional recovery and normalized lesion-induced alterations in synaptic proteins.
- Proinflammatory molecules were reduced following microglial depletion.
- Long-term microglial elimination increased dendritic spine density by approximately 35% in the adult brain.
- Conversely, microglia were found to play a protective role during the initial lesioning phase, as their absence potentiated neuronal loss.
Conclusions:
- Chronically activated microglia impede functional recovery after a neuronal insult, suggesting that therapeutics targeting microglial activation could be beneficial.
- Microglia play a significant role in shaping the synaptic landscape in the adult brain, even under homeostatic conditions.
- Microglial manipulation offers a potential strategy for investigating and treating conditions with synaptic aberrations.

