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Updated: Apr 6, 2026

Whole-Brain 3D Activation and Functional Connectivity Mapping in Mice using Transcranial Functional Ultrasound Imaging
Published on: February 24, 2021
Real-time imaging of brain activity in freely moving rats using functional ultrasound
Alan Urban1,2, Clara Dussaux1,2, Guillaume Martel1
1UMRS 894 INSERM Centre de Psychiatrie et Neurosciences, Faculté de Médecine, Université Paris Descartes, Sorbonne Paris Cité, Paris, France.
Abstract:
Innovative imaging methods help to investigate the complex relationship between brain activity and behavior in freely moving animals. Functional ultrasound (fUS) is an imaging modality suitable for recording cerebral blood volume (CBV) dynamics in the whole brain but has so far been used only in head-fixed and anesthetized rodents. We designed a fUS device for tethered brain imaging in freely moving rats based on a miniaturized ultrasound probe and a custom-made ultrasound scanner. We monitored CBV changes in rats during various behavioral states such as quiet rest, after whisker or visual stimulations, and in a food-reinforced operant task. We show that fUS imaging in freely moving rats could efficiently decode brain activity in real time.

