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Updated: Apr 6, 2026

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Fluorescent End-Labeling and Encapsulation of Long RNAs for Single-Molecule FRET-TIRF Microscopy
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Site-directed spin labeling of 2'-amino groups in RNA with isoindoline nitroxides that are resistant to reduction
Subham Saha1, Anil P Jagtap, Snorri Th Sigurdsson
1University of Iceland, Department of Chemistry, Science Institute, Dunhaga 3, 107 Reykjavik, Iceland. snorrisi@hi.is.
Abstract:
Two aromatic isothiocyanates, derived from isoindoline nitroxides, were synthesized and selectively reacted with 2'-amino groups in RNA. The spin labels displayed limited mobility in RNA, making them promising candidates for distance measurements by pulsed EPR. After conjugation to RNA, a tetraethyl isoindoline derivative showed significant stability under reducing conditions.
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