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Multiplexed Single Cell mRNA Sequencing Analysis of Mouse Embryonic Cells
Published on: January 7, 2020
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Metabolic suppression during mesodermal differentiation of embryonic stem cells identified by single-cell
Yuanshu Zhou1, Ikuma Fujisawa, Kosuke Ino
1WPI-Advanced Institute for Materials Research, Tohoku University, Sendai 980-8577, Japan.
Molecular Biosystems
|July 28, 2015
Summary
Embryonic stem cell differentiation involves temporary metabolic suppression in mesodermal progenitor cells. This metabolic shift is linked to specific gene expression patterns during differentiation.
Area of Science:
- Developmental Biology
- Cell Biology
- Stem Cell Research
Background:
- Vascular Endothelial Growth Factor Receptor 2 (Flk-1) is a key marker for mesodermal progenitors derived from embryonic stem cells (ESCs).
- Flk-1-positive (Flk-1(+)) cells differentiate into hemangioblasts and cardiovascular progenitors at early and late stages, respectively.
- Understanding metabolic regulation during differentiation is crucial for regenerative medicine and developmental studies.
Purpose of the Study:
- To investigate the metabolic characteristics of Flk-1(+) and Flk-1(-) cells during embryonic stem cell differentiation.
- To identify potential subgroups based on metabolic activity within these cell populations.
- To explore the relationship between metabolic status and key developmental gene expression.
Main Methods:
- Separation of Flk-1(+) and Flk-1(-) cells from spontaneously differentiating mouse ESC-derived embryoid bodies (EBs).
- Analysis of cell aggregate size and oxygen consumption rate (OCR).
- Single-cell comprehensive gene expression analysis, including Nanog and Pou5f1 expression.
Main Results:
- Late-stage Flk-1(+) cell aggregates exhibited smaller size and lower OCR compared to Flk-1(-) cells.
- Both Flk-1(+) and Flk-1(-) cells segregated into subgroups with high or low glucose metabolic activity.
- Metabolic suppression was observed in cells with intermediate expression of Nanog and Pou5f1.
Conclusions:
- Temporary metabolic suppression is an intrinsic characteristic of mesodermal differentiation.
- Metabolic regulation is dynamically controlled during ESC differentiation and linked to specific progenitor populations.
- Gene expression patterns, particularly Nanog and Pou5f1, correlate with metabolic states during differentiation.

