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Updated: Apr 6, 2026

Exploring the Regulation of Lipid Droplet Catabolism through Lipophagy
Published on: January 31, 2025
SLC9A3R1 stimulates autophagy via BECN1 stabilization in breast cancer cells
Hong Liu1, Yan Ma1, Hong-Wei He1
1a Department of Oncology ; Institute of Medicinal Biotechnology; Peking Union Medical College; Chinese Academy of Medical Sciences ; Beijing , China.
Abstract:
Autophagy, a self-catabolic process, has been found to be involved in abrogating the proliferation and metastasis of breast cancer. SLC9A3R1 (solute carrier family 9, subfamily A [NHE3, cation proton antiporter 3], member 3 regulator 1), a multifunctional scaffold protein, is involved in suppressing breast cancer cells proliferation and the SLC9A3R1-related signaling pathway regulates the activation of autophagy processes. However, the precise regulatory mechanism and signaling pathway of SLC9A3R1 in the regulation of autophagy processes in breast cancer cells remains unknown. Here, we report that the stability of BECN1, the major component of the autophagic core lipid kinase complex, is augmented in SLC9A3R1-overexpressing breast cancer MDA-MB-231 cells, subsequently stimulating autophagy by attenuating the interaction between BECN1 and BCL2. Initially, we found that SLC9A3R1 partially stimulated autophagy through the PTEN-PI3K-AKT1 signaling cascade in MDA-MB-231 cells. SLC9A3R1 then attenuated the interaction between BECN1 and BCL2 to stimulate the autophagic core lipid kinase complex. Further findings revealed that SLC9A3R1 bound to BECN1 and subsequently blocked ubiquitin-dependent BECN1 degradation. And the deletion of the C-terminal domain of SLC9A3R1 resulted in significantly reduced binding to BECN1. Moreover, the lack of C-terminal of SLC9A3R1 neither reduced the ubiquitination of BECN1 nor induced autophagy in breast cancer cells. The decrease in BECN1 degradation induced by SLC9A3R1 resulted in the activity of autophagy stimulation in breast cancer cells. These findings indicate that the SLC9A3R1-BECN1 signaling pathway participates in the activation of autophagy processes in breast cancer cells.
Insights
Solute carrier family 9, member 3 regulator 1 (SLC9A3R1) enhances breast cancer autophagy by stabilizing BECN1. This interaction blocks BECN1 degradation, promoting autophagy and potentially inhibiting cancer progression.
Area of Science:
- Cell Biology
- Molecular Biology
- Oncology
Background:
- Autophagy is a cellular process implicated in controlling breast cancer proliferation and metastasis.
- Solute carrier family 9, subfamily A, member 3 regulator 1 (SLC9A3R1) is a scaffold protein known to suppress breast cancer cell proliferation.
- The precise mechanisms by which SLC9A3R1 regulates autophagy in breast cancer remain unclear.
Purpose of the Study:
- To elucidate the regulatory mechanism and signaling pathway of SLC9A3R1 in breast cancer cell autophagy.
- To investigate how SLC9A3R1 influences the stability of BECN1 and its interaction with BCL2.
Main Methods:
- Overexpression of SLC9A3R1 in MDA-MB-231 breast cancer cells.
- Analysis of BECN1 stability and its interaction with BCL2.
- Investigation of the PTEN-PI3K-AKT1 signaling pathway.
- Assessment of BECN1 ubiquitination and degradation.
- Deletion mutant analysis of SLC9A3R1's C-terminal domain.
Main Results:
- SLC9A3R1 overexpression increased BECN1 stability, thereby stimulating autophagy.
- SLC9A3R1 attenuated the BECN1-BCL2 interaction, promoting autophagic core lipid kinase complex activation.
- SLC9A3R1 directly bound to BECN1, inhibiting its ubiquitin-dependent degradation.
- The C-terminal domain of SLC9A3R1 is crucial for BECN1 binding and subsequent autophagy induction.
Conclusions:
- SLC9A3R1 activates autophagy in breast cancer cells by stabilizing BECN1 and preventing its degradation.
- The SLC9A3R1-BECN1 signaling pathway is a key regulator of autophagy in breast cancer.
- These findings highlight a novel mechanism for SLC9A3R1 in breast cancer, potentially offering therapeutic targets.
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