HipBA-promoter structures reveal the basis of heritable multidrug tolerance
Maria A Schumacher1, Pooja Balani2, Jungki Min1
1Department of Biochemistry, Duke University School of Medicine, Durham, North Carolina 27710, USA.
Abstract:
Multidrug tolerance is largely responsible for chronic infections and caused by a small population of dormant cells called persisters. Selection for survival in the presence of antibiotics produced the first genetic link to multidrug tolerance: a mutant in the Escherichia coli hipA locus. HipA encodes a serine-protein kinase, the multidrug tolerance activity of which is neutralized by binding to the transcriptional regulator HipB and hipBA promoter. The physiological role of HipA in multidrug tolerance, however, has been unclear. Here we show that wild-type HipA contributes to persister formation and that high-persister hipA mutants cause multidrug tolerance in urinary tract infections. Perplexingly, high-persister mutations map to the N-subdomain-1 of HipA far from its active site. Structures of higher-order HipA-HipB-promoter complexes reveal HipA forms dimers in these assemblies via N-subdomain-1 interactions that occlude their active sites. High-persistence mutations, therefore, diminish HipA-HipA dimerization, thereby unleashing HipA to effect multidrug tolerance. Thus, our studies reveal the mechanistic basis of heritable, clinically relevant antibiotic tolerance.
Insights
Multidrug tolerance in chronic infections stems from dormant persister cells. New research reveals how HipA protein dimerization controls this antibiotic tolerance, offering insights into urinary tract infections.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Multidrug tolerance, often caused by dormant persister cells, is a major factor in chronic infections.
- The Escherichia coli hipA gene was the first genetic link identified to multidrug tolerance.
Purpose of the Study:
- To elucidate the physiological role of the HipA protein in multidrug tolerance.
- To understand the mechanism behind high-persister mutations in hipA and their clinical relevance.
Main Methods:
- Investigated wild-type and mutant HipA protein function in persister formation.
- Utilized structural biology to determine the mechanism of HipA-HipB-promoter complex formation.
- Analyzed high-persister mutations in relation to HipA structure and dimerization.
Main Results:
- Wild-type HipA contributes to persister cell formation.
- High-persister hipA mutants were found to cause multidrug tolerance in urinary tract infections.
- HipA forms dimers via N-subdomain-1 interactions, occluding its active site; mutations disrupt this dimerization, enhancing tolerance.
Conclusions:
- HipA protein dimerization is a key mechanism regulating multidrug tolerance.
- Disruption of HipA dimerization by specific mutations underlies clinically relevant antibiotic tolerance.
- This provides a mechanistic basis for heritable antibiotic tolerance in bacteria.
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