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Updated: Apr 6, 2026

Extracting Modified Microtubules from Mammalian Cells to Study Microtubule-Protein Complexes by Cryo-Electron Microscopy
Published on: March 3, 2023
Mechanistic Origin of Microtubule Dynamic Instability and Its Modulation by EB Proteins
Rui Zhang1, Gregory M Alushin2, Alan Brown3
1Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Abstract:
Microtubule (MT) dynamic instability is driven by GTP hydrolysis and regulated by microtubule-associated proteins, including the plus-end tracking end-binding protein (EB) family. We report six cryo-electron microscopy (cryo-EM) structures of MTs, at 3.5 Å or better resolution, bound to GMPCPP, GTPγS, or GDP, either decorated with kinesin motor domain after polymerization or copolymerized with EB3. Subtle changes around the E-site nucleotide during hydrolysis trigger conformational changes in α-tubulin around an "anchor point," leading to global lattice rearrangements and strain generation. Unlike the extended lattice of the GMPCPP-MT, the EB3-bound GTPγS-MT has a compacted lattice that differs in lattice twist from that of the also compacted GDP-MT. These results and the observation that EB3 promotes rapid hydrolysis of GMPCPP suggest that EB proteins modulate structural transitions at growing MT ends by recognizing and promoting an intermediate state generated during GTP hydrolysis. Our findings explain both EBs end-tracking behavior and their effect on microtubule dynamics.
Insights
End-binding proteins (EB) regulate microtubule dynamics by interacting with tubulin structures during GTP hydrolysis. These interactions influence microtubule lattice arrangements and growth, explaining EB protein behavior at microtubule ends.
Area of Science:
- Biochemistry
- Structural Biology
- Cell Biology
Background:
- Microtubule (MT) dynamic instability is crucial for cellular processes.
- GTP hydrolysis and microtubule-associated proteins (MAPs), like EB proteins, regulate MT dynamics.
Purpose of the Study:
- To elucidate the structural mechanisms by which EB proteins modulate microtubule dynamics.
Main Methods:
- Six cryo-electron microscopy (cryo-EM) structures of microtubules were determined at high resolution (≤3.5 Å).
- Structures included microtubules bound to GMPCPP, GTPγS, or GDP, and decorated with kinesin or copolymerized with EB3.
Main Results:
- Identified subtle conformational changes in α-tubulin during GTP hydrolysis, leading to global lattice rearrangements and strain.
- Observed that EB3 binding to GTPγS-MTs results in a compacted lattice with distinct twist compared to GDP-MTs.
- Demonstrated that EB3 promotes rapid hydrolysis of GMPCPP, suggesting a role in recognizing intermediate states.
Conclusions:
- EB proteins modulate structural transitions at growing microtubule ends by interacting with intermediate states formed during GTP hydrolysis.
- These findings explain the end-tracking behavior of EBs and their influence on microtubule dynamics.
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