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Published on: August 20, 2019
ERC analysis: web-based inference of gene function via evolutionary rate covariation.
Nicholas W Wolfe1, Nathan L Clark1
1Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Researchers can now build gene networks using evolutionary rate covariation (ERC) to find genes with similar evolutionary histories. The ERC Analysis website offers tools to explore these connections and discover novel gene functions.
Area of Science:
- Genomics
- Bioinformatics
- Evolutionary Biology
Background:
- Comparative genomics data is rapidly expanding.
- Evolutionary Rate Covariation (ERC) identifies genes with similar evolutionary histories.
- This approach reveals functional associations between genes.
Purpose of the Study:
- To introduce the ERC Analysis website for constructing gene networks.
- To enable researchers to infer novel genes and explore evolutionary connections.
- To provide a user-friendly platform for analyzing genome-wide datasets.
Main Methods:
- Utilizes the evolutionary rate covariation (ERC) signature.
- Leverages genome-wide datasets for analysis.
- Offers five distinct analytical methods with graphical output and statistical support.
Main Results:
- Enables the construction of gene networks based on evolutionary history.
- Facilitates the identification of genes with shared evolutionary trajectories.
- Provides insights into functional associations and evolutionary connections between biological pathways.
Conclusions:
- The ERC Analysis website is a valuable resource for comparative genomics research.
- It empowers the discovery of novel gene functions and evolutionary relationships.
- The platform supports an expanding range of taxonomic groups for broader applicability.
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