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Updated: Apr 5, 2026

A Protocol for Analyzing Hepatitis C Virus Replication
Published on: June 26, 2014
The Novel Cyclophilin Inhibitor CPI-431-32 Concurrently Blocks HCV and HIV-1 Infections via a Similar Mechanism of
Philippe A Gallay1, Michael D Bobardt1, Udayan Chatterji1
1Department of Immunology & Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America.
Insights
A new in vitro model allows testing drugs against co-infection by Hepatitis C virus (HCV) and Human Immunodeficiency Virus type 1 (HIV-1). CPI-431-32, a cyclophilin inhibitor, effectively inhibits both viruses, even drug-resistant strains.
Area of Science:
- Virology
- Immunology
- Pharmacology
Background:
- Hepatitis C virus (HCV)-related liver disease is a major cause of illness and death in patients co-infected with HIV-1.
- Existing direct-acting antivirals (DAAs) are often ineffective against HCV/HIV-1 co-infection, leading to higher rates of liver fibrosis, cirrhosis, and cancer.
- A lack of suitable in vitro models has hindered the development of treatments for HCV/HIV-1 co-infection.
Purpose of the Study:
- To develop a novel in vitro co-infection model for simultaneously studying HCV and HIV-1 replication.
- To evaluate the efficacy of cyclophilin inhibitors (CypI), specifically CPI-431-32, against concurrent HCV and HIV-1 replication.
- To compare the antiviral activity of CPI-431-32 with existing treatments like nelfinavir, daclatasvir, and alisporivir (ALV).
Main Methods:
- Development of a co-culture system where HCV and HIV-1 replicate concurrently in human hepatocytes and CD4+ T-lymphocytes, respectively.
- Treatment of the co-culture model with CPI-431-32, nelfinavir, and daclatasvir at pre- and post-infection stages.
- Assessment of viral replication inhibition, including against drug-resistant variants, and evaluation of cyclophilin A (CypA) interactions.
Main Results:
- CPI-431-32 demonstrated simultaneous inhibition of both HCV and HIV-1 replication in the co-infection model.
- CPI-431-32 effectively inhibited drug-resistant HCV and HIV-1 variants, outperforming single-target antivirals.
- CPI-431-32 showed superior efficacy over ALV in interrupting established co-infection, linked to potent inhibition of CypA isomerase activity and viral protein interactions.
Conclusions:
- CPI-431-32 is a potent inhibitor of both HCV and HIV-1 replication, offering a promising therapeutic strategy for co-infected patients.
- The novel co-infection model provides a valuable platform for evaluating antiviral agents targeting co-infections.
- CPI-431-32 holds potential as a single agent or in combination with DAAs to combat HCV and HIV-1 infections.
Abstract:
HCV-related liver disease is the main cause of morbidity and mortality of HCV/HIV-1 co-infected patients. Despite the recent advent of anti-HCV direct acting antivirals (DAAs), the treatment of HCV/HIV-1 co-infected patients remains a challenge, as these patients are refractory to most therapies and develop liver fibrosis, cirrhosis and liver cancer more often than HCV mono-infected patients. Until the present study, there was no suitable in vitro assay to test the inhibitory activity of drugs on HCV/HIV-1 co-infection. Here we developed a novel in vitro "co-infection" model where HCV and HIV-1 concurrently replicate in their respective main host target cells--human hepatocytes and CD4+ T-lymphocytes. Using this co-culture model, we demonstrate that cyclophilin inhibitors (CypI), including a novel cyclosporin A (CsA) analog, CPI-431-32, simultaneously inhibits replication of both HCV and HIV-1 when added pre- and post-infection. In contrast, the HIV-1 protease inhibitor nelfinavir or the HCV NS5A inhibitor daclatasvir only blocks the replication of a single virus in the "co-infection" system. CPI-431-32 efficiently inhibits HCV and HIV-1 variants, which are normally resistant to DAAs. CPI-431-32 is slightly, but consistently more efficacious than the most advanced clinically tested CypI--alisporivir (ALV)--at interrupting an established HCV/HIV-1 co-infection. The superior antiviral efficacy of CPI-431-32 over ALV correlates with its higher potency inhibition of cyclophilin A (CypA) isomerase activity and at preventing HCV NS5A-CypA and HIV-1 capsid-CypA interactions known to be vital for replication of the respective viruses. Moreover, we obtained evidence that CPI-431-32 prevents the cloaking of both the HIV-1 and HCV genomes from cellular sensors. Based on these results, CPI-431-32 has the potential, as a single agent or in combination with DAAs, to inhibit both HCV and HIV-1 infections.
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