Genes Required for Free Phage Production are Essential for Pseudomonas aeruginosa Chronic Lung Infections

Andrée-Ann Lemieux1, Julie Jeukens1, Irena Kukavica-Ibrulj1

  • 1Institut de biologie intégrative et des systèmes, Université Laval, Québec City, Canada.

Insights

Temperate phages in Pseudomonas aeruginosa are crucial for chronic lung infections in cystic fibrosis patients. Disrupting these phages significantly reduces bacterial virulence and alters gene expression, highlighting their role in infection establishment.

Area of Science:

  • Microbiology
  • Infectious Diseases
  • Genomics

Background:

  • Pseudomonas aeruginosa is an opportunistic pathogen causing chronic lung infections in cystic fibrosis patients.
  • The Liverpool Epidemic Strain (LESB58) is antibiotic-resistant, transmissible, and linked to severe patient outcomes.
  • LESB58 harbors 6 prophages and 5 genomic islands, potential targets for understanding infection dynamics.

Purpose of the Study:

  • To investigate the role of prophages and genomic islands in the in vivo maintenance and virulence of Pseudomonas aeruginosa LESB58.
  • To identify specific genes within prophages and genomic islands essential for chronic lung infection establishment.
  • To elucidate the impact of prophage disruption on bacterial gene expression and phage production.

Main Methods:

  • Construction of a large-scale polymerase chain reaction (PCR)-based signature-tagged mutagenesis library of 9216 LESB58 mutants.
  • Screening of mutants in a rat model of chronic lung infection to identify those defective for in vivo maintenance.
  • Whole-genome sequencing and transcription profiling (quantitative PCR and RNA-Seq) of selected mutants.

Main Results:

  • 162 mutants were defective for in vivo maintenance, with 11 having insertions in prophage or genomic island genes.
  • Mutants with disrupted prophages exhibited diminished virulence and reduced phage production.
  • Prophage disruption led to widespread trans-acting effects on the bacterial transcriptome, indicating significant regulatory roles.

Conclusions:

  • Temperate phages are pivotal in establishing Pseudomonas aeruginosa chronic lung infections.
  • Prophages modulate bacterial host gene expression, influencing virulence and infection persistence.
  • Targeting prophage-host interactions presents a potential strategy for combating chronic P. aeruginosa infections.

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