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Updated: Apr 5, 2026

Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances
Published on: October 11, 2018
Performance comparison of multi-label learning algorithms on clinical data for chronic diseases.
Damien Zufferey1, Thomas Hofer2, Jean Hennebert3
1AISLab, Institute of Information Systems, University of Applied Sciences and Arts Western Switzerland, Techno-Pôle 3, 3960 Sierre, Switzerland; DIVA research group, Department of Informatics, University of Fribourg, Bd de Pérolles 90, 1700 Fribourg, Switzerland.
Multi-label learning algorithms were compared for classifying chronic diseases using patient data. Binary relevance methods excelled in disease detection and scalability, while RAkEL was effective for ranking dominant conditions.
Area of Science:
- Medical Informatics
- Machine Learning
- Data Science
Background:
- Classifying chronic diseases in patients is crucial for clinical decision-making.
- Multi-label learning effectively models overlapping medical conditions common in chronic illnesses.
- Existing multi-label algorithms require performance comparison for analyzing sequential clinical data.
Purpose of the Study:
- To compare the performance of state-of-the-art multi-label learning algorithms.
- To analyze multivariate sequential clinical data from chronically ill patients.
- To enhance the evaluation of new algorithms for disease classification.
Main Methods:
- Utilized a summary statistics approach for processing sequential clinical data.
- Extracted interpretable features linked to patient medical records.
- Evaluated algorithms including ML-kNN, AdaBoostMH, binary relevance, classifier chains, HOMER, and RAkEL on the MIMIC-II dataset.
Main Results:
- Binary relevance approaches demonstrated optimal performance in most scenarios, particularly for disease detection.
- Binary relevance methods exhibit scalability for large datasets and are easy to implement.
- The RAkEL algorithm performed well in ranking labels by dominant disease, despite scalability issues with large datasets.
Conclusions:
- Binary relevance algorithms are highly effective for chronic disease classification and detection.
- RAkEL offers value in prioritizing diagnoses based on disease dominance.
- This comparative study aids in selecting appropriate multi-label learning methods for clinical data analysis.
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