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Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
A simple stochastic model for the feedback circuit between p16INK4a and p53 mediated by p38MAPK: implications for
L R de Oliveira1, J C M Mombach, G Castellani
1Physics Department, Universidade Federal de Santa Maria, Santa Maria, Rio Grande do Sul, Brazil. lucianarenatadeoliveira@gmail.com.
Abstract:
The mechanisms leading to the cell fate decision between apoptosis and senescence upon DNA damage are still unclear and have stochastic features. Cellular oxidative stress can generate DNA damage and activate the important mitogen-activated protein kinase 14 (p38MAPK) that is involved in pathologies like Alzheimer's disease. Based on experimental evidence we propose a simple network that might operate at the core of the cell control machinery for the choice between apoptosis and senescence involving the cross-talk between p38MAPK, the tumor suppressor protein p53 and the cyclin-dependent kinase inhibitor (p16INK4a). We have performed two types of analyses, deterministic and stochastic, exploring the system's parameter space, in the first, we calculated the fixed points of the deterministic model and, in the second, we numerically integrated the master equation for the stochastic version. The model shows a variety of behaviors dependent on the parameters including states of high expression levels of p53 or p16INK4a that can be associated with an apoptotic or senescent phenotype, respectively, in agreement with experimental data. In addition, we observe both monostable and bistable behavior (where bistability is a phenomenon in which two stable steady states coexist for a fixed set of control parameter values) which here we suggest to be involved in the cell fate decision problem.
Insights
Cellular DNA damage triggers apoptosis or senescence via a network involving p38MAPK, p53, and p16INK4a. This model reveals how these factors influence cell fate decisions, with bistability playing a key role.
Area of Science:
- Cellular and Molecular Biology
- Systems Biology
- Biophysics
Background:
- Cell fate decisions between apoptosis and senescence upon DNA damage are complex and stochastic.
- Oxidative stress induces DNA damage, activating mitogen-activated protein kinase 14 (p38MAPK), implicated in diseases like Alzheimer's.
Purpose of the Study:
- To propose and analyze a core regulatory network for cell fate decisions (apoptosis vs. senescence) upon DNA damage.
- To investigate the roles of p38MAPK, p53, and p16INK4a in this decision-making process.
Main Methods:
- Developed a mathematical model integrating p38MAPK, p53, and p16INK4a interactions.
- Performed deterministic analysis by calculating fixed points of the model.
- Conducted stochastic analysis by numerically integrating the master equation.
Main Results:
- The model predicts distinct behaviors based on parameter variations.
- High p53 levels correlate with apoptosis, while high p16INK4a levels associate with senescence.
- Observed monostable and bistable dynamics, suggesting bistability's role in cell fate commitment.
Conclusions:
- The proposed network provides a framework for understanding cell fate decisions post-DNA damage.
- The interplay between p38MAPK, p53, and p16INK4a is crucial for determining apoptosis or senescence.
- Bistability in the network is a potential mechanism driving the commitment to a specific cell fate.
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