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Updated: Apr 5, 2026

Obtaining Human Microglia from Adult Human Brain Tissue
Published on: August 30, 2020
Immune phenotypes of microglia in human neurodegenerative disease: challenges to detecting microglial polarization in
Douglas G Walker1, Lih-Fen Lue2
1Laboratory of Neuroinflammation, Banner Sun Health Research Institute, 10515 West Santa Fe Drive, Sun City, AZ, 85351, USA. douglas.walker@bannerhealth.com.
Abstract:
Inflammatory responses in the brain, which can be demonstrated by changes in properties of microglia, the brain-resident macrophages, are a common feature of human neurodegenerative diseases. Different monocyte/macrophage phenotypes have been defined by changes in expression of cytokines, receptors and other markers as a response to different classes of stimuli. Monocytes, macrophages and microglia can have a range of phenotypes with associated properties depending on their microenvironment. Macrophage/microglia polarization states have been defined as classical activation (M1), alternative activation (M2a), type II alternative activation (M2b) or acquired deactivation (M2c). Available markers for identifying microglial phenotypes in human brains are still limited; those available provide incomplete information on the functions or polarization states of microglia observed in tissues from diseases such as Alzheimer's disease, Parkinson's disease and multiple sclerosis. The most widely used marker to describe activated microglia in human brains, particularly diseased brains, has been HLA-DR, the major histocompatibility complex II protein. HLA-DR-positive microglia can have a wide range of activation morphologies that are affected not only by disease pathology, but also by their differentiation states and brain regions. Two other widely used markers to identify microglia in human brains are ionized calcium binding adaptor molecule-1 and CD68. Although their expression changes in diseased brains, these markers do not show specificity for different phenotypes. Over the years there have been studies with additional markers that attempt to further define microglial properties, particularly in Alzheimer's disease brains. Most studies have employed immunohistochemical techniques to identify microglia in tissue sections, but recent advances in this field have allowed gene expression profiling of microglia upon immediate isolation from brains. We will review which markers might better define different activation phenotypes of microglia in human brains and whether they fit into current microglial polarization schemes.
Insights
Microglia, the brain
Area of Science:
- Neuroscience and Neuroimmunology
- Cellular and Molecular Biology
Background:
- Neuroinflammation, involving microglia, is central to neurodegenerative diseases like Alzheimer's, Parkinson's, and multiple sclerosis.
- Microglia exhibit diverse phenotypes (M1, M2a, M2b, M2c) influenced by their microenvironment and stimuli.
- Current markers for human microglia phenotypes are limited, offering incomplete functional insights in disease states.
Purpose of the Study:
- To review and evaluate markers for defining microglial activation phenotypes in human brains.
- To assess the utility of existing and novel markers within current microglial polarization schemes.
- To improve the characterization of microglia in neurodegenerative diseases.
Main Methods:
- Review of literature on microglial markers and polarization states in human neurodegenerative diseases.
- Analysis of commonly used markers such as HLA-DR, ionized calcium binding adaptor molecule-1, and CD68.
- Consideration of recent advances in gene expression profiling for immediate microglia isolation.
Main Results:
- Widely used markers like HLA-DR show broad activation but lack specificity for distinct microglial phenotypes.
- Markers such as ionized calcium binding adaptor molecule-1 and CD68 change with disease but are not phenotype-specific.
- Existing markers provide limited information on the functional states of microglia in diseases like Alzheimer's.
Conclusions:
- There is a need for more specific markers to accurately define microglial activation states in human brain diseases.
- Current markers inadequately capture the complexity of microglial polarization and function in neurodegeneration.
- Further research is required to identify and validate markers that align with established microglial polarization schemes.
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