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A covalently bonded heteronuclear diatomic molecule can be modeled as two vibrating masses connected by a spring. The vibrational frequency of the bond can be expressed using an equation derived from Hooke's law, which describes how the force applied to stretch or compress a spring is proportional to the displacement of the spring. In this case, the atoms behave like masses, and the bond acts like a spring.
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A proton M that is coupled to a proton X results in doublet signals for M. However, NMR-active nuclei can be simultaneously coupled to more than one nonequivalent nucleus. When M is coupled to a second proton A, such as in styrene oxide, each peak in the doublet is split into another doublet.
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In IR spectroscopy of carboxylic acids, the C=O bond shows a characteristic band between 1710 and 1760 cm⁻¹, and the O–H bond exhibits a broad band between 2500 and 3300 cm⁻¹.
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In Ultraviolet–Visible (UV–Vis) spectroscopy, the absorption of electromagnetic radiation is used to probe the electronic structure of molecules. This technique provides insights into molecular electronic transitions, particularly the movement of electrons between different molecular orbitals. Radiation is absorbed if the energy of the electromagnetic radiation passing through the molecule is precisely equal to the energy difference between the excited and ground states. During this...
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Monitoring Intramolecular Proton Transfer with Two-Dimensional Infrared Spectroscopy: A Computational Prediction.

Z L Terranova1, S A Corcelli1

  • 1Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States.

The Journal of Physical Chemistry Letters
|August 21, 2015
PubMed
Summary
This summary is machine-generated.

This study computationally demonstrates how two-dimensional infrared (2D IR) spectroscopy using a carbon-deuterium (C-D) reporter can track proton transfer kinetics in malonaldehyde. The C-D bond

Keywords:
carbon−deuterium bondchemical exchangemalonaldehydeproton transfertwo-dimensional infrared (2D IR) spectroscopy

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Area of Science:

  • Physical Chemistry
  • Spectroscopy
  • Computational Chemistry

Background:

  • Proton transfer is fundamental to many chemical and biological processes.
  • Monitoring proton transfer kinetics is crucial for understanding these phenomena.
  • Malonaldehyde serves as a model compound for studying proton transfer dynamics.

Purpose of the Study:

  • To computationally demonstrate the utility of 2D IR spectroscopy with a C-D reporter for monitoring proton transfer kinetics.
  • To investigate the sensitivity of the C-D stretch vibrational frequency to malonaldehyde tautomers.
  • To validate computational methods for simulating 2D IR spectra and proton transfer rates.

Main Methods:

  • Mixed quantum mechanics/molecular mechanics (QM/MM) simulations were employed.
  • The self-consistent-charge density functional tight binding (SCC-DFTB) method was used for electronic structure calculations.
  • 2D IR line shapes for the C-D stretch in labeled malonaldehyde were computed in aqueous solution.

Main Results:

  • The C-D stretch vibrational frequency showed approximately 150 cm(-1) sensitivity to the two tautomers of malonaldehyde.
  • 2D IR spectra revealed cross peaks indicative of proton chemical exchange.
  • The kinetics derived from the growth of cross-peaks and decay of diagonal peaks accurately matched the simulated proton transfer rate.

Conclusions:

  • 2D IR spectroscopy with a C-D reporter is a viable computational tool for studying proton transfer kinetics.
  • The C-D reporter group provides sufficient spectral sensitivity for distinguishing tautomers.
  • The SCC-DFTB method accurately simulates 2D IR spectra and proton transfer dynamics.