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Updated: Apr 5, 2026

Global Level Quantification of Histone Post-Translational Modifications in a 3D Cell Culture Model of Hepatic Tissue
Published on: May 5, 2022
Silver nanoparticle-induced hemoglobin decrease involves alteration of histone 3 methylation status
Yi Qian1, Jie Zhang2, Qinglin Hu3
1State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China; College of Biological and Environmental Engineering, Zhejiang University of Technology, Hangzhou, 310032, China.
Silver nanoparticles (AgNPs) alter histone methylation, impacting gene expression and hemoglobin production in erythroid cells. This epigenetic mechanism explains AgNP toxicity at sublethal doses.
Area of Science:
- Epigenetics
- Nanotoxicology
- Molecular Biology
Background:
- Silver nanoparticles (AgNPs) exhibit toxicity, but underlying molecular mechanisms, especially epigenetic changes like histone modifications, remain unclear.
- While genotoxicity of AgNPs is studied, their impact on histone methylation is less understood.
- Investigating AgNP-induced epigenetic alterations is crucial for understanding their biological effects.
Purpose of the Study:
- To investigate AgNP-induced alterations in histone methylation in erythroid cells.
- To determine if these epigenetic changes contribute to reduced globin production.
- To elucidate the molecular mechanisms behind AgNP-mediated epigenetic modifications.
Main Methods:
- Treatment of erythroid MEL cells with AgNPs at sublethal concentrations.
- Global methylation analysis of histone 3 (H3).
- Chromatin immunoprecipitation followed by PCR (ChIP-PCR) to analyze H3K4 and H3K79 methylation at the β-globin locus.
- All-atom molecular dynamics simulations to predict AgNP-histone interactions.
- AgNP-mediated pull-down and immunoprecipitation assays.
- Assessment of RNA polymerase II activity and chromatin binding.
Main Results:
- AgNP treatment significantly reduced global H3 methylation levels in erythroid cells, independent of oxidative stress.
- Methylation of H3 at lysine 4 (H3K4) and lysine 79 (H3K79) on the β-globin locus was markedly decreased.
- Reduced methylation correlated with decreased histone methyltransferase DOT-1L and MLL levels and direct binding of AgNPs to H3/H4, causing steric hindrance.
- AgNP-treated cells showed decreased RNA polymerase II activity and chromatin binding, leading to reduced hemoglobin production.
- Silver ions alone did not induce alterations in histone methylation.
Conclusions:
- AgNPs induce epigenetic alterations by modifying histone methylation status, specifically reducing H3K4 and H3K79 methylation.
- Direct interaction between AgNPs and histones (H3/H4) plays a role in preventing methylation.
- These epigenetic changes contribute to decreased hemoglobin synthesis, offering a novel perspective on AgNP toxicity at sublethal concentrations.
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