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Published on: August 28, 2019
Adaptive Responses Limited by Intrinsic Noise
Prabhat Shankar1, Masatoshi Nishikawa2, Tatsuo Shibata3
1Department of Mathematical and Life Sciences, Hiroshima University, Higashi-Hiroshima, Japan; Laboratory for Physical Biology, RIKEN Quantitative Biology Center, Kobe, Japan.
Adaptive systems in biology face a trade-off between response magnitude and noise. Negative feedback loops (nFBL) offer a better response-to-noise ratio than incoherent feedforward loops (iFFL) for sensory adaptation.
Area of Science:
- Systems biology
- Computational neuroscience
- Biophysics
Background:
- Sensory systems adapt to environmental stimuli for efficient sensing.
- Noise, both intrinsic and extrinsic, can limit the performance of adaptive systems.
- The response-fluctuation relationship in non-equilibrium adaptive systems remains poorly understood.
Purpose of the Study:
- To systematically explore the relationship between response and fluctuation in biological adaptation systems.
- To compare two network motifs, incoherent feedforward loops (iFFL) and negative feedback loops (nFBL), for their adaptation capabilities.
- To identify conditions that limit the response magnitude in adaptation systems.
Main Methods:
- Theoretical analysis of two network motifs: iFFL and nFBL.
- Investigating the trade-off between response magnitude and intrinsic noise.
- Comparing the response-to-noise ratio of iFFL and nFBL.
Main Results:
- Response magnitude in adaptation systems is fundamentally limited by intrinsic noise.
- While iFFL adapts over a broader parameter range, nFBL provides a superior response-to-noise ratio.
- Conditions for the upper limit of response were identified for both network motifs.
Conclusions:
- Biological adaptation systems exhibit a trade-off between response and noise.
- nFBLs are potentially favored in nature for implementing adaptation due to their higher response-to-noise efficiency.
- Understanding these limitations is crucial for designing synthetic biological systems.
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