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Perspectives on Neuroscience
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A Digital Repository and Execution Platform for Interactive Scholarly Publications in Neuroscience.

Victoria Hodge1, Mark Jessop2, Martyn Fletcher2

  • 1Department of Computer Science, University of York, Deramore Lane, York, YO10 5GH, UK. victoria.hodge@york.ac.uk.

Neuroinformatics
|August 27, 2015
PubMed
Summary

The CARMEN Virtual Laboratory (VL) now features an interactive publications repository. This platform enhances research reproducibility by linking publications with data and software for reuse and verification.

Keywords:
CollaborationExecution platformInteractive publication repositoryInteractive publicationsReproducible neuroscienceScientific workflowsWeb portal

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Area of Science:

  • Neuroscience
  • Computational Science
  • Data Science

Background:

  • Neuroscientists require platforms for data storage, sharing, development, execution, reproduction, and publication.
  • Existing platforms may lack integrated functionalities for linking research outputs like data and software to publications.

Purpose of the Study:

  • To introduce and describe the new interactive publications repository functionality within the CARMEN Virtual Laboratory (VL).
  • To enable users to link data and software directly to publications, facilitating examination and execution within the platform.
  • To promote research reuse, reproducibility, and open access principles in neuroscience.

Main Methods:

  • Development of a cloud-based Software as a Service (SaaS) platform, the CARMEN VL.
  • Implementation of an interactive publications repository allowing linkage of data and software to published work.
  • Integration of a scientific workflow environment for combining software services into processing trees.
  • Incorporation of secure access control for managing resource permissions.

Main Results:

  • The new facility enables users to examine and execute associated data and software within the VL, mirroring authors' original research conditions.
  • The platform supports the analysis of vast datasets using cloud-based software services.
  • Workflows can be associated with publications, allowing users to execute them.
  • The repository ensures long-term preservation and curation of research resources.

Conclusions:

  • The interactive publications repository enhances research reproducibility and verification through open access principles.
  • The CARMEN VL facilitates building upon existing research via data and software reuse.
  • The platform provides a secure and collaborative environment for neuroscientific research, respecting copyright and privacy.