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Updated: Apr 4, 2026

A Flow Cytometry-Based Cell Surface Protein Binding Assay for Assessing Selectivity and Specificity of an Anticancer Aptamer
Published on: September 13, 2022
An aptamer targeting shared tumor-specific peptide antigen of MAGE-A3 in multiple cancers
Chin-Yu Wang1, Bai-Ling Lin1, Chung-Hsuan Chen1
1Genomics Research Center, Academia Sinica, Taipei, Taiwan.
Abstract:
A DNA aptamer was identified against the shared tumor-specific MAGE-A3111-125 peptide antigen. The dissociation constant between the aptamer and the peptide was measured at 57 nM. Binding of the aptamer to seven types of cancer cells, melanoma, breast, colorectal, liver, lung, pancreas and oral cancer, was confirmed with flow cytometry and fluorescence imaging. Cy3-conjugated aptamers signals were specifically localized to the surface of those cancer cells. The results indicate that the DNA aptamer against the shared tumor-specific MAGE-A3 peptide can be used in cancer cell targeting and has the potential for developing into new modalities for the diagnosis of multiple cancers.
Insights
A novel DNA aptamer targets the MAGE-A3 peptide found on multiple cancer cells. This aptamer shows potential for developing new diagnostic tools for various cancers, including melanoma and lung cancer.
Area of Science:
- Biochemistry
- Molecular Biology
- Oncology
Background:
- The MAGE-A3 (melanoma antigen gene A3) protein is a tumor-specific antigen expressed in various cancers.
- Targeting tumor-specific antigens is a key strategy in cancer therapy and diagnostics.
- Developing specific and sensitive targeting agents is crucial for effective cancer management.
Purpose of the Study:
- To identify and characterize a DNA aptamer targeting the MAGE-A3111-125 peptide.
- To evaluate the aptamer's binding affinity and specificity to cancer cells.
- To explore the potential of this aptamer in cancer cell targeting and diagnosis.
Main Methods:
- Selection and characterization of a DNA aptamer against the MAGE-A3111-125 peptide.
- Measurement of aptamer-peptide dissociation constant (Kd) using biophysical techniques.
- Confirmation of aptamer binding to cancer cells via flow cytometry and fluorescence imaging.
- Utilizing Cy3-conjugated aptamers for signal detection and localization.
Main Results:
- A DNA aptamer with a dissociation constant of 57 nM was identified against the MAGE-A3111-125 peptide.
- The aptamer demonstrated specific binding to seven types of cancer cells: melanoma, breast, colorectal, liver, lung, pancreas, and oral cancer.
- Fluorescence imaging confirmed specific localization of the aptamer to the surface of these cancer cells.
Conclusions:
- The identified DNA aptamer effectively targets the MAGE-A3 peptide on multiple cancer types.
- This aptamer holds significant potential for developing novel cancer cell targeting strategies.
- The findings suggest a promising new modality for the diagnosis of various cancers.
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