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Updated: Apr 4, 2026

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
Histone deacetylase inhibitors modulate KATP subunit transcription in HL-1 cardiomyocytes through effects on
Naheed Fatima1, Devin C Cohen1, Gauthaman Sukumar1
1Department of Anatomy, Physiology and Genetics, F. Edward Hebert School of Medicine, Uniformed Services University of the Health Sciences Bethesda, MD, USA.
Insights
Histone deacetylase inhibitors (HDIs) increase cardiac SUR2 expression via epigenetic changes. This process requires cellular cholesterol depletion, revealing a link between cholesterol homeostasis and gene regulation.
Area of Science:
- Cardiology
- Epigenetics
- Molecular Biology
Background:
- Histone deacetylase inhibitors (HDIs) are investigated for various conditions, including cutaneous T-cell lymphoma.
- HDIs have been linked to electrocardiographic ST segment changes, suggesting effects on cardiac ion channels.
- ATP-sensitive potassium (KATP) channels are crucial in cardiac function and are regulated by specific subunits.
Purpose of the Study:
- To investigate the hypothesis that HDIs affect cardiac KATP channel subunit expression.
- To explore the epigenetic mechanisms underlying HDI-induced changes in KATP channel subunit expression.
- To determine the role of cellular cholesterol in mediating the effects of HDIs on KATP channel expression.
Main Methods:
- Treatment of HL-1 cardiomyocytes and MIN6 pancreatic β-cells with HDIs (romidepsin, trichostatin A).
- Quantitative mRNA expression analysis for SUR1 and SUR2 KATP channel subunits.
- Chromatin immunoprecipitation to assess histone modifications (H3K9Ac) at the SUR2 promoter.
- Assessment of cellular cholesterol levels following HDI treatment.
Main Results:
- HDIs significantly increased SUR2 (Abcc9) mRNA expression (~20-fold) in cardiomyocytes but not SUR1 (Abcc8) or in pancreatic β-cells.
- Increased H3K9Ac histone mark enrichment was observed at the SUR2 promoter, indicating epigenetic regulation.
- HDI treatment led to a depletion of cellular cholesterol, which was found to be essential for the observed increase in SUR2 expression.
Conclusions:
- KATP channel subunit expression in cardiomyocytes is subject to epigenetic regulation.
- Cellular cholesterol homeostasis plays a critical role in mediating HDI-induced epigenetic regulation of SUR2 expression.
- These findings suggest a molecular mechanism for the cardiac effects of HDIs and highlight a novel link between cholesterol and epigenetic control.
Abstract:
Histone deacetylase inhibitors (HDIs) are under investigation for the treatment of a number of human health problems. HDIs have proven therapeutic value in refractory cases of cutaneous T-cell lymphoma. Electrocardiographic ST segment morphological changes associated with HDIs were observed during development. Because ST segment morphology is typically linked to changes in ATP sensitive potassium (KATP) channel activity, we tested the hypothesis that HDIs affect cardiac KATP channel subunit expression. Two different HDIs, romidepsin and trichostatin A, caused ~20-fold increase in SUR2 (Abcc9) subunit mRNA expression in HL-1 cardiomyocytes. The effect was specific for the SUR2 subunit as neither compound causes a marked change in SUR1 (Abcc8) expression. Moreover, the effect was cell specific as neither HDI markedly altered KATP subunit expression in MIN6 pancreatic β-cells. We observe significant enrichment of the H3K9Ac histone mark specifically at the SUR2 promoter consistent with the conclusion that chromatin remodeling at this locus plays a role in increasing SUR2 gene expression. Unexpectedly, however, we also discovered that HDI-dependent depletion of cellular cholesterol is required for the observed effects on SUR2 expression. Taken together, the data in the present study demonstrate that KATP subunit expression can be epigenetically regulated in cardiomyocytes, defines a role for cholesterol homeostasis in mediating epigenetic regulation and suggests a potential molecular basis for the cardiac effects of the HDIs.
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