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Influence of TYK2 in systemic sclerosis susceptibility: a new locus in the IL-12 pathway
Elena López-Isac1, Diana Campillo-Davo1, Lara Bossini-Castillo1
1Institute of Parasitology and Biomedicine López-Neyra, IPBLN-CSIC, PTS Granada, Granada, Spain.
Objectives:
TYK2 is a common genetic risk factor for several autoimmune diseases. This gene encodes a protein kinase involved in interleukin 12 (IL-12) pathway, which is a well-known player in the pathogenesis of systemic sclerosis (SSc). Therefore, we aimed to assess the possible role of this locus in SSc.
Methods:
This study comprised a total of 7103 patients with SSc and 12 220 healthy controls of European ancestry from Spain, USA, Germany, the Netherlands, Italy and the UK. Four TYK2 single-nucleotide polymorphisms (V362F (rs2304256), P1104A (rs34536443), I684S (rs12720356) and A928V (rs35018800)) were selected for follow-up based on the results of an Immunochip screening phase of the locus. Association and dependence analyses were performed by the means of logistic regression and conditional logistic regression. Meta-analyses were performed using the inverse variance method.
Results:
Genome-wide significance level was reached for TYK2 V362F common variant in our pooled analysis (p=3.08×10(-13), OR=0.83), while the association of P1104A, A928V and I684S rare and low-frequency missense variants remained significant with nominal signals (p=2.28×10(-3), OR=0.80; p=1.27×10(-3), OR=0.59; p=2.63×10(-5), OR=0.83, respectively). Interestingly, dependence and allelic combination analyses showed that the strong association observed for V362F with SSc, corresponded to a synthetic association dependent on the effect of the three previously mentioned TYK2 missense variants.
Conclusions:
We report for the first time the association of TYK2 with SSc and reinforce the relevance of the IL-12 pathway in SSc pathophysiology.
Insights
This study links the TYK2 gene to systemic sclerosis (SSc), a common autoimmune disease. Our findings highlight the crucial role of the TYK2 gene and the interleukin-12 pathway in SSc development.
Area of Science:
- Immunogenetics
- Rheumatology
- Molecular Biology
Background:
- Tyrosine kinase 2 (TYK2) is implicated in autoimmune diseases.
- The interleukin-12 (IL-12) pathway is a key factor in systemic sclerosis (SSc) pathogenesis.
- Genetic variations in TYK2 may influence SSc susceptibility.
Purpose of the Study:
- To investigate the association between TYK2 gene variants and systemic sclerosis (SSc).
- To explore the role of the TYK2 locus in the pathophysiology of SSc.
Main Methods:
- A case-control study involving 7103 SSc patients and 12,220 healthy controls of European ancestry.
- Analysis of four TYK2 single-nucleotide polymorphisms (SNPs): V362F, P1104A, I684S, and A928V.
- Statistical analyses included logistic regression, conditional logistic regression, and meta-analyses using the inverse variance method.
Main Results:
- The common TYK2 V362F variant showed genome-wide significant association with SSc (p=3.08×10⁻¹³).
- Rare missense variants (P1104A, A928V, I684S) also demonstrated significant nominal associations.
- Allelic combination analyses revealed that the V362F association was synthetic, driven by the effects of the other three missense variants.
Conclusions:
- This study establishes, for the first time, a significant association between TYK2 and systemic sclerosis (SSc).
- The findings underscore the importance of the IL-12 pathway in SSc pathophysiology.
- Genetic variations in TYK2 represent a risk factor for SSc.
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