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Finite Element Modelling of a Cellular Electric Microenvironment
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Ewald Electrostatics for Mixtures of Point and Continuous Line Charges
Hanne S Antila1, Paul R Van Tassel2, Maria Sammalkorpi1
1Department of Chemistry, Aalto University , 00076 Aalto, Finland.
Abstract:
Many charged macro- or supramolecular systems, such as DNA, are approximately rod-shaped and, to the lowest order, may be treated as continuous line charges. However, the standard method used to calculate electrostatics in molecular simulation, the Ewald summation, is designed to treat systems of point charges. We extend the Ewald concept to a hybrid system containing both point charges and continuous line charges. We find the calculated force between a point charge and (i) a continuous line charge and (ii) a discrete line charge consisting of uniformly spaced point charges to be numerically equivalent when the separation greatly exceeds the discretization length. At shorter separations, discretization induces deviations in the force and energy, and point charge-point charge correlation effects. Because significant computational savings are also possible, the continuous line charge Ewald method presented here offers the possibility of accurate and efficient electrostatic calculations.
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