Computing Elementary Flux Modes Involving a Set of Target Reactions

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Chemical reactions often occur in a stepwise fashion involving two or more distinct reactions taking place in a sequence. A balanced equation indicates the reacting species and the product species, but it reveals no details about how the reaction occurs at the molecular level. The reaction mechanism (or reaction path) provides details regarding the precise, step-by-step process by which a reaction occurs. Each of the steps in a reaction mechanism is called an elementary reaction. These...
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Rate Laws and Equilibrium Constants for Elementary Reactions

Reactions proceed through multi-step mechanisms, where each elementary step is a single process and intermediates appear only between successive steps.Elementary reactions are categorized by molecularity which is the number of molecules reacting in one step.For example, unimolecular reactions involve one molecule, bimolecular reactions involve two, and termolecular reactions involve three; higher molecularity reactions are rarer because simultaneous multi-molecule collisions are unlikely.The...
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Reaction Mechanisms: Rate-limiting Step Approximation

The rate-determining step, or RDS, in a chemical reaction is the slowest step that determines the overall reaction rate. It is identified by using the observed rate law and typically involves approximation methods like the RDS approximation or the steady-state approximation.In the RDS approximation, also known as the rate-limiting-step or equilibrium approximation, the reaction mechanism consists of one or more reversible reactions near equilibrium, followed by a slower RDS, and then one or...
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