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Structure and Inhibition of Microbiome β-Glucuronidases Essential to the Alleviation of Cancer Drug Toxicity
Bret D Wallace1, Adam B Roberts2, Rebecca M Pollet1
1Department of Chemistry, University of North Carolina at Chapel Hill, NC 27599-3290, USA.
Abstract:
The selective inhibition of bacterial β-glucuronidases was recently shown to alleviate drug-induced gastrointestinal toxicity in mice, including the damage caused by the widely used anticancer drug irinotecan. Here, we report crystal structures of representative β-glucuronidases from the Firmicutes Streptococcus agalactiae and Clostridium perfringens and the Proteobacterium Escherichia coli, and the characterization of a β-glucuronidase from the Bacteroidetes Bacteroides fragilis. While largely similar in structure, these enzymes exhibit marked differences in catalytic properties and propensities for inhibition, indicating that the microbiome maintains functional diversity in orthologous enzymes. Small changes in the structure of designed inhibitors can induce significant conformational changes in the β-glucuronidase active site. Finally, we establish that β-glucuronidase inhibition does not alter the serum pharmacokinetics of irinotecan or its metabolites in mice. Together, the data presented advance our in vitro and in vivo understanding of the microbial β-glucuronidases, a promising new set of targets for controlling drug-induced gastrointestinal toxicity.
Insights
Selective inhibition of bacterial beta-glucuronidases can reduce gastrointestinal toxicity from drugs like irinotecan. This study reveals enzyme structures and confirms inhibition doesn't affect drug metabolism in mice.
Area of Science:
- Microbiology
- Structural Biology
- Pharmacology
Background:
- Bacterial beta-glucuronidases contribute to drug-induced gastrointestinal toxicity.
- Selective inhibition of these enzymes shows promise in mitigating this toxicity, as seen with irinotecan in mice.
Purpose of the Study:
- To elucidate the structural and functional diversity of bacterial beta-glucuronidases.
- To characterize inhibitors targeting these enzymes and assess their impact on drug pharmacokinetics.
Main Methods:
- X-ray crystallography was used to determine the structures of beta-glucuronidases from Streptococcus agalactiae, Clostridium perfringens, and Escherichia coli.
- Biochemical characterization of beta-glucuronidase from Bacteroides fragilis was performed.
- Inhibitor design and testing were conducted, along with pharmacokinetic studies in mice.
Main Results:
- Crystal structures revealed conserved yet distinct active site features among different bacterial species.
- Functional diversity in catalytic activity and inhibitor susceptibility was observed.
- Designed inhibitors induced significant conformational changes in enzyme active sites.
- Beta-glucuronidase inhibition did not alter the serum pharmacokinetics of irinotecan or its metabolites in mice.
Conclusions:
- Microbial beta-glucuronidases exhibit functional diversity, presenting varied inhibition profiles.
- Targeting bacterial beta-glucuronidases is a viable strategy for managing drug-induced gastrointestinal toxicity.
- Further research into these enzymes and their inhibitors can lead to improved therapeutic outcomes.
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