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LMNA gene single nucleotide polymorphisms in dilated cardiomyopathy of Han children
Li-Jian Xie1, Ting-Ting Xiao1, Min Huang1
1Shanghai Children's Hospital, Shanghai Jiaotong University Shanghai 200040, China.
Insights
Single nucleotide polymorphisms (SNPs) in the LMNA gene may increase susceptibility to dilated cardiomyopathy (DCM) in Chinese children. This study identified three SNPs associated with DCM in the Han Chinese population.
Area of Science:
- Genetics
- Cardiology
- Pediatrics
Background:
- Dilated cardiomyopathy (DCM) is a significant cause of heart failure in children.
- The LMNA gene encodes lamins, crucial structural proteins of the nuclear envelope, and mutations are known to cause various cardiomyopathies.
- The genetic basis of DCM in the Chinese Han population requires further investigation.
Purpose of the Study:
- To determine if mutations or variations in the LMNA gene are associated with DCM in Chinese Han children.
- To identify specific single nucleotide polymorphisms (SNPs) within the LMNA gene linked to DCM susceptibility.
Main Methods:
- DNA analysis of 78 DCM patients and 100 healthy controls from the Chinese Han population.
- Polymerase chain reaction (PCR) amplification and sequencing of 12 exons and adjacent introns of the LMNA gene.
- Statistical analysis (χ(2) test) to compare allele and genotype frequencies between DCM patients and controls.
Main Results:
- No disease-causing mutations in the LMNA gene were identified in DCM patients.
- Three novel nonsense single nucleotide polymorphisms (SNPs) were detected: c.1908C>T (rs4641) in exon 10, c.861C>T (rs5380) in exon 5, and c.1338C>T (rs5058) in exon 7.
- Significantly higher frequencies of specific genotypes (TT, TC) and the C allele for rs4641, and TC genotypes for rs5380 and rs5058 were observed in DCM patients compared to controls (P<0.05).
Conclusions:
- Single nucleotide polymorphisms (SNPs) in the LMNA gene, rather than disease-causing mutations, may be associated with an increased susceptibility to DCM in Chinese Han children.
- These findings suggest a potential role for specific LMNA gene variants in the pathogenesis of pediatric DCM in this population.
Objective:
To investigate whether LMNA gene mutation is associated with dilated cardiomyopathy (DCM) in Chinese Han Race children.
Methods:
DNA was isolated from 78 patients with DCM and 100 healthy Chinese children who served as controls. 12 exons in the functional regions and the adjacent part of introns of the LMNA gene were amplified with polymerase chain reactions (PCR) and the PCR products were sequenced with DNA sequencer. We compared the DNA sequence with Blast software online PubMed website. The differences of allele and genotype between the groups were detected by χ(2) test.
Results:
No disease-causing mutation in LMNA gene was found in all DCM patients. Three nonsense single nucleotide polymorphisms (SNPs) were identified. ① The first is c.1908C>T (H566H, rs4641) which was located at exon 10 of LMNA gene. It was found in 29 DCM cases and 15 control subjects. Compared to healthy controls, the frequency of TT and TC genotypes, and the C allele were significantly increased in DCM patients (P<0.05). ② The second was c.861C>T (A287A, rs5380) which was located at exon 5 of LMNA gene. It was found in 9 DCM cases and 2 control subjects. The frequency of TC genotype was significantly increased in DCM patients (P<0.05). ③ The third was c.1338C>T (D446D, rs5058) which located at exon 7 of LMNA gene. It was found in 8 DCM cases and 3 control subjects. The frequency of TC genotype was significantly increased in DCM patients (P<0.05).
Conclusion:
The SNP of LMNA gene may be associated with the susceptivity of DCM in Chinese Han children.
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