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Draft-genome sequence of Shewanella algae strain C6G3
Axel Aigle1, Valerie Michotey1, Patricia Bonin1
1Aix Marseille Université, CNRS, Université de Toulon, IRD, MIO UM 110, 13288 Marseille, France.
Standards in Genomic Sciences
|September 19, 2015
Summary
Shewanella algae C6G3, a metabolically versatile bacterium from Arcachon Bay, has its draft genome sequenced. This provides insights into its adaptability to various anaerobic conditions and electron acceptors.
Area of Science:
- Microbiology
- Genomics
- Environmental Science
Background:
- Shewanella algae is known for its metabolic versatility, utilizing diverse electron acceptors under anaerobic conditions.
- The strain C6G3 was isolated from the muddy sediment of Arcachon Bay, France.
Purpose of the Study:
- To present the non-contiguous draft-genome sequence of Shewanella algae strain C6G3.
- To provide genomic insights into the metabolic capabilities of this bacterium.
Main Methods:
- Isolation of Shewanella algae C6G3 from Arcachon Bay sediment.
- Whole-genome sequencing and assembly of the draft genome.
Main Results:
- The draft genome sequence of Shewanella algae C6G3 is 4,879,425 bp.
- The genome contains 5792 predicted genes, including 24 rRNA genes, 86 tRNA genes, and 5660 protein-coding genes.
Conclusions:
- The genome sequence provides a foundation for understanding the metabolic versatility of Shewanella algae C6G3.
- Further research can explore the genetic basis for its ability to use various terminal electron acceptors.
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