Interactions between RNA-binding proteins and P32 homologues in trypanosomes and human cells

Juan Manuel Polledo1, Gabriela Cervini1, María Albertina Romaniuk1

  • 1Instituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús, UNSAM-CONICET, Buenos Aires, Argentina.

Current Genetics
|September 20, 2015
PubMed

Insights

RNA recognition motifs (RRMs) in RNA-binding proteins (RBPs) mediate protein-protein interactions. This study highlights the RRM interaction between UBP1 and P22, and TDP-43 with P32, suggesting P32

Area of Science:

  • Molecular Biology
  • Protein Interactions
  • RNA Metabolism

Background:

  • RNA-binding proteins (RBPs) utilize RNA recognition motifs (RRMs) for mRNA metabolism.
  • RRMs, primarily known for RNA binding, can also mediate protein-protein interactions.
  • The multifunctional protein P32/C1QBP interacts with various RBPs.

Purpose of the Study:

  • To investigate the interaction between the RRM of UBP1 and P22.
  • To explore the interaction between TDP-43 RRMs and human P32.
  • To elucidate the role of P32 in regulating RBP function.

Main Methods:

  • Interaction screening using RRMs of UBP1 and TDP-43.
  • Identification of interacting partners, including P22 and P32.
  • Analysis of interaction interfaces, specifically RRM1 of TDP-43.

Main Results:

  • The RRM of UBP1 interacts with P22, a P32 homolog.
  • TDP-43 RRMs, particularly RRM1, interact with human P32.
  • P32 was identified in TDP-43 interactomic studies.

Conclusions:

  • TDP-43 RRM1 mediates interaction with P32.
  • P32 interacts with multiple RBPs, suggesting a regulatory role.
  • P32 functions as a molecular chaperone for its RBP ligands.

Related Concept Videos

RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
11.4K
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

4.2K
Eukaryotic RNA Polymerases00:58

Eukaryotic RNA Polymerases

RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
28.0K
Transcription Initiation01:47

Transcription Initiation

Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
22.1K
Types of RNA01:23

Types of RNA

Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
73.9K
Transcription Attenuation in Prokaryotes02:42

Transcription Attenuation in Prokaryotes

Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure.  Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
19.4K