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Human Pluripotent Stem Cell Based Developmental Toxicity Assays for Chemical Safety Screening and Systems Biology Data Generation
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Human pluripotent stem cell-derived neural constructs for predicting neural toxicity.

Michael P Schwartz1, Zhonggang Hou2, Nicholas E Propson2

  • 1Department of Biomedical Engineering, University of Wisconsin, Madison, WI 53706;

Proceedings of the National Academy of Sciences of the United States of America
|September 23, 2015
PubMed
Summary

Human embryonic stem (ES) cell-derived neural progenitor cells and other precursors formed 3D brain models. These models accurately predicted chemical toxicity, reducing drug failure risks.

Keywords:
differentiationmachine learningorganoidtissue engineeringtoxicology

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Area of Science:

  • Neuroscience
  • Toxicology
  • Biotechnology

Background:

  • Human pluripotent stem cell-based in vitro models offer potential for reducing drug failures and assessing chemical safety.
  • Current models often lack the complexity to fully replicate human physiology.

Purpose of the Study:

  • To develop a 3D in vitro model of the developing human brain using stem cells.
  • To create a predictive model for chemical toxicity assessment using this 3D brain model.

Main Methods:

  • Human embryonic stem (ES) cell-derived neural progenitor cells, endothelial cells, mesenchymal stem cells, and microglia/macrophage precursors were cultured on polyethylene glycol hydrogels in serum-free medium.
  • 3D neural constructs were analyzed using RNA sequencing (RNA-Seq).
  • Linear support vector machines were employed to build a predictive model from RNA-Seq data for chemical toxicity.

Main Results:

  • The precursors self-assembled into reproducible 3D neural constructs with diverse neuronal, glial, vascular, and microglia populations.
  • RNA-Seq confirmed the expression of key genes related to neurogenesis, vasculature development, and microglia.
  • The predictive model achieved 0.91 accuracy in cross-validation and correctly classified 9 of 10 chemicals in a blinded trial.

Conclusions:

  • This 3D stem cell-based brain model provides a reproducible and physiologically relevant platform for studying brain development and cellular interactions.
  • The developed predictive model demonstrates high accuracy in identifying chemical toxicity, offering a promising tool for early-stage drug safety assessment.