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Updated: Apr 3, 2026

Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
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Aggregate and Heatmap Representations of Genome-Wide Localization Data Using VAP, a Versatile Aggregate Profiler.

Mylène Brunelle1, Charles Coulombe2, Christian Poitras3

  • 1Département de biologie, Faculté des sciences, Université de Sherbrooke, 2500 boul. de l'Université, Sherbrooke, QC, Canada, J1K 2R1.

Methods in Molecular Biology (Clifton, N.J.)
|September 26, 2015
PubMed
Summary

This chapter details best practices for using the versatile aggregate profiler (VAP) tool to analyze chromatin signal enrichment data. It focuses on generating aggregate profiles and highlights new features in VAP version 1.1.0 for improved genomic data analysis.

Keywords:
Aggregate profilesAverage profilesChIP-SeqData analysisGraphical representationHeatmaps

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