Heterogeneous Mechanisms of Secondary Resistance and Clonal Selection in Sarcoma during Treatment with Nutlin
Audrey Laroche1, Kevin Tran-Cong1, Vanessa Chaire1
1INSERM U916, Institut Bergonié, Bordeaux, France; Sarcoma Unit, Institut Bergonié, Bordeaux, France.
Abstract:
Nutlin inhibits TP53-MDM2 interaction and is under investigation in soft-tissue sarcomas (STS) and other malignancies. Molecular mechanisms of secondary resistance to nutlin in STS are unknown. We performed whole-transcriptome sequencing (RNA-seq) on three pretreatment and secondary resistant STS cell lines selected based on their high primary sensitivity to nutlin. Our data identified a subset of cancer gene mutations and ploidy variations that were positively selected following treatment, including TP53 mutations in 2 out of 3 resistant cell lines. Further, secondary resistance to nutlin was associated with deregulation of apoptosis-related genes and marked productive autophagy, the inhibition of which resulted in significant restoration of nutlin-induced cell death. Collectively, our findings argue that secondary resistance to nutlin in STS involved heterogeneous mechanisms resulting from clonal evolution and several biological pathways. Alternative dosing regimens and combination with other targeted agents are needed to achieve successful development of nutlin in the clinical setting.
Insights
Nutlin resistance in soft-tissue sarcomas (STS) arises from diverse mechanisms, including TP53 mutations and altered apoptosis pathways. Inhibiting autophagy can restore nutlin
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Nutlin, a TP53-MDM2 interaction inhibitor, is being investigated for soft-tissue sarcomas (STS).
- Mechanisms underlying secondary resistance to nutlin in STS remain largely unknown.
Purpose of the Study:
- To investigate the molecular mechanisms of secondary resistance to nutlin in soft-tissue sarcomas (STS).
- To identify genetic and molecular alterations associated with nutlin resistance.
Main Methods:
- Whole-transcriptome sequencing (RNA-seq) was performed on nutlin-sensitive and resistant STS cell lines.
- Analysis focused on identifying gene mutations, ploidy variations, and deregulation of apoptosis-related genes.
Main Results:
- Secondary resistance was linked to specific gene mutations (including TP53 in 2/3 lines) and ploidy variations.
- Deregulation of apoptosis-related genes and increased productive autophagy were observed in resistant cells.
- Inhibition of autophagy partially restored sensitivity to nutlin-induced cell death.
Conclusions:
- Secondary nutlin resistance in STS involves heterogeneous mechanisms driven by clonal evolution and multiple pathways.
- Targeting autophagy and exploring alternative dosing or combination therapies may overcome resistance.
- Further research is needed for successful clinical development of nutlin in STS.
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