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Updated: Apr 1, 2026

Live-cell Imaging of Lysosomal Membrane Permeabilization During Necroptosis
Published on: November 14, 2025
CNOT3 suppression promotes necroptosis by stabilizing mRNAs for cell death-inducing proteins
Toru Suzuki1, Chisato Kikuguchi1, Sahil Sharma1
1Cell Signal Unit, Okinawa Institute of Science and Technology, 1919-1 Onna-son, Okinawa 904-0495, Japan.
Abstract:
The CCR4-NOT complex is conserved in eukaryotes and is involved in mRNA metabolism, though its molecular physiological roles remain to be established. We show here that CNOT3-depleted mouse embryonic fibroblasts (MEFs) undergo cell death. Levels of other complex subunits are decreased in CNOT3-depleted MEFs. The death phenotype is rescued by introduction of wild-type (WT), but not mutated CNOT3, and is not suppressed by the pan-caspase inhibitor, zVAD-fluoromethylketone. Gene expression profiling reveals that mRNAs encoding cell death-related proteins, including receptor-interacting protein kinase 1 (RIPK1) and RIPK3, are stabilized in CNOT3-depleted MEFs. Some of these mRNAs bind to CNOT3, and in the absence of CNOT3 their poly(A) tails are elongated. Inhibition of RIPK1-RIPK3 signaling by a short-hairpin RNA or a necroptosis inhibitor, necrostatin-1, confers viability upon CNOT3-depleted MEFs. Therefore, we conclude that CNOT3 targets specific mRNAs to prevent cells from being disposed to necroptotic death.
Insights
CNOT3 depletion in mouse cells triggers necroptotic cell death by stabilizing specific mRNAs. Restoring CNOT3 or inhibiting RIPK1-RIPK3 signaling prevents this cell death, revealing CNOT3
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- The CCR4-NOT complex regulates mRNA metabolism, but its precise physiological functions are not fully understood.
- CNOT3 is a subunit of the CCR4-NOT complex, crucial for its function in eukaryotes.
Purpose of the Study:
- To investigate the physiological role of CNOT3 in mammalian cells.
- To elucidate the molecular mechanisms underlying cell death observed upon CNOT3 depletion.
Main Methods:
- Depletion of CNOT3 in mouse embryonic fibroblasts (MEFs) using RNA interference.
- Analysis of cell viability, caspase-independent cell death pathways, and mRNA expression profiling.
- Investigation of mRNA-protein interactions and polyadenylation status.
Main Results:
- CNOT3 depletion in MEFs leads to cell death, independent of caspases.
- Stabilization of mRNAs encoding cell death mediators like RIPK1 and RIPK3 was observed.
- CNOT3 directly binds to specific mRNAs, and its absence results in poly(A) tail elongation.
- Inhibition of RIPK1-RIPK3 signaling rescues CNOT3-depleted cells from death.
Conclusions:
- CNOT3 plays a critical role in preventing necroptotic cell death.
- CNOT3 regulates the stability of specific mRNAs involved in cell death pathways.
- The CCR4-NOT complex, through CNOT3, acts as a key regulator of programmed cell death.
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