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Updated: Apr 1, 2026

Using the E1A Minigene Tool to Study mRNA Splicing Changes
Published on: April 22, 2021
Widespread JNK-dependent alternative splicing induces a positive feedback loop through CELF2-mediated regulation of
Nicole M Martinez1, Laura Agosto1, Jinsong Qiu2
1Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA; Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA;
Abstract:
Alternative splicing is prevalent among genes encoding signaling molecules; however, the functional consequence of differential isoform expression remains largely unknown. Here we demonstrate that, in response to T-cell activation, the Jun kinase (JNK) kinase MAP kinase kinase 7 (MKK7) is alternatively spliced to favor an isoform that lacks exon 2. This isoform restores a JNK-docking site within MKK7 that is disrupted in the larger isoform. Consistently, we show that skipping of MKK7 exon 2 enhances JNK pathway activity, as indicated by c-Jun phosphorylation and up-regulation of TNF-α. Moreover, this splicing event is itself dependent on JNK signaling. Thus, MKK7 alternative splicing represents a positive feedback loop through which JNK promotes its own signaling. We further show that repression of MKK7 exon 2 is dependent on the presence of flanking sequences and the JNK-induced expression of the RNA-binding protein CELF2, which binds to these regulatory elements. Finally, we found that ∼25% of T-cell receptor-mediated alternative splicing events are dependent on JNK signaling. Strikingly, these JNK-dependent events are also significantly enriched for responsiveness to CELF2. Together, our data demonstrate a widespread role for the JNK-CELF2 axis in controlling splicing during T-cell activation, including a specific role in propagating JNK signaling.
Insights
Jun kinase (JNK) signaling activates a feedback loop by promoting alternative splicing of MAP kinase kinase 7 (MKK7). This splicing enhances JNK pathway activity and is controlled by the RNA-binding protein CELF2 during T-cell activation.
Area of Science:
- Molecular Biology
- Immunology
- Cell Signaling
Background:
- Alternative splicing of signaling molecules is common, but its functional impact is often unclear.
- Understanding how alternative splicing regulates immune cell signaling pathways is crucial.
Purpose of the Study:
- To investigate the functional consequences of alternative splicing in MAP kinase kinase 7 (MKK7) during T-cell activation.
- To elucidate the role of Jun kinase (JNK) signaling in regulating MKK7 alternative splicing and its impact on JNK pathway activity.
Main Methods:
- Analysis of MKK7 alternative splicing in response to T-cell activation.
- Assessment of JNK pathway activity via c-Jun phosphorylation and TNF-α expression.
- Investigation of the role of RNA-binding protein CELF2 in regulating MKK7 splicing.
Main Results:
- T-cell activation favors an MKK7 isoform lacking exon 2, which restores a JNK-docking site.
- Skipping of MKK7 exon 2 enhances JNK pathway activity, creating a positive feedback loop.
- JNK signaling and CELF2 are critical for MKK7 exon 2 repression, influencing ∼25% of T-cell receptor-mediated splicing events.
Conclusions:
- MKK7 alternative splicing is a JNK-dependent positive feedback mechanism that amplifies JNK signaling during T-cell activation.
- The JNK-CELF2 axis plays a significant role in controlling alternative splicing in T-cells, propagating JNK signaling.
- This study reveals a novel regulatory axis controlling immune cell signaling through alternative splicing.
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