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Published on: July 5, 2022
Genetic sharing and heritability of paediatric age of onset autoimmune diseases
Yun R Li1,2, Sihai D Zhao3, Jin Li1
1Center for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104, USA.
Insights
This study quantifies the heritability of pediatric autoimmune diseases (pAIDs) using genomic variations. It reveals significant genetic contributions for Type 1 Diabetes and Juvenile Idiopathic Arthritis, uncovering shared genetic risks among pAIDs.
Area of Science:
- Genetics
- Immunology
- Pediatrics
Background:
- Autoimmune diseases (AIDs) are polygenic conditions affecting 7-10% of the Western Hemisphere population.
- Effective therapies for AIDs remain limited, necessitating further research into their genetic underpinnings.
- Paediatric AIDs (pAIDs) represent a significant subset of these complex diseases.
Purpose of the Study:
- To quantify the heritability of various pAIDs attributable to common genomic variations (SNP-h²).
- To identify shared and disease-specific genomic variations contributing to pAID heritability.
- To explore correlations and genetic risk sharing among different pAIDs.
Main Methods:
- Utilized SNP-h² to estimate the heritability of pAIDs, including JIA, SLE, CEL, T1D, UC, CD, PS, SPA, and CVID.
- Performed pairwise analysis to determine correlations between different autoimmune diseases.
- Investigated the contribution of Major Histocompatibility Complex (MHC) variations to heritability estimates.
Main Results:
- Significant SNP-h² estimates were observed for Type 1 Diabetes (T1D) (0.863) and Juvenile Idiopathic Arthritis (JIA) (0.727).
- Modest heritability was found for Ulcerative Colitis (UC) (0.386) and Crohn's Disease (CD) (0.454).
- Strongest correlations were found between UC-CD (0.69) and JIA-CVID (0.343), indicating shared genetic risks.
Conclusions:
- Common genomic variations significantly contribute to the heritability of pAIDs.
- Identified unexpected shared genetic risks among pAIDs, particularly between UC and CD, and JIA and CVID.
- Results partition genomic contributions, differentiating shared and disease-specific variations in pAID heritability.
Abstract:
Autoimmune diseases (AIDs) are polygenic diseases affecting 7-10% of the population in the Western Hemisphere with few effective therapies. Here, we quantify the heritability of paediatric AIDs (pAIDs), including JIA, SLE, CEL, T1D, UC, CD, PS, SPA and CVID, attributable to common genomic variations (SNP-h(2)). SNP-h(2) estimates are most significant for T1D (0.863±s.e. 0.07) and JIA (0.727±s.e. 0.037), more modest for UC (0.386±s.e. 0.04) and CD (0.454±0.025), largely consistent with population estimates and are generally greater than that previously reported by adult GWAS. On pairwise analysis, we observed that the diseases UC-CD (0.69±s.e. 0.07) and JIA-CVID (0.343±s.e. 0.13) are the most strongly correlated. Variations across the MHC strongly contribute to SNP-h(2) in T1D and JIA, but does not significantly contribute to the pairwise rG. Together, our results partition contributions of shared versus disease-specific genomic variations to pAID heritability, identifying pAIDs with unexpected risk sharing, while recapitulating known associations between autoimmune diseases previously reported in adult cohorts.
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