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Bioboxes: standardised containers for interchangeable bioinformatics software.

Peter Belmann1, Johannes Dröge2, Andreas Bremges3

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Bioboxes solve common bioinformatics software issues using containerization. This approach ensures software is easily obtainable, installable, and usable for modern biology research.

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Area of Science:

  • Bioinformatics
  • Computational Biology
  • Software Engineering

Background:

  • Modern biology heavily relies on software tools.
  • Challenges include software availability, complex installations, and user interfaces.
  • These issues hinder accessibility and usability for researchers.

Purpose of the Study:

  • To address the challenges of bioinformatics software accessibility.
  • To propose a solution for making bioinformatics software more interchangeable.
  • To leverage containerization for improved software sharing.

Main Methods:

  • Utilizing containerization technology, exemplified by Docker.
  • Developing standardized interfaces for software containers.
  • Implementing the 'bioboxes' concept.

Main Results:

  • Bioboxes provide a standardized way to package bioinformatics software.
  • This standardization facilitates easier installation and use.
  • Interoperability of bioinformatics tools is enhanced.

Conclusions:

  • Containerization offers a robust solution to software accessibility problems in biology.
  • Bioboxes enable seamless integration and use of diverse bioinformatics tools.
  • The proposed approach promotes reproducible and efficient biological research.