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Published on: May 24, 2024
Metabolic responses induced by DNA damage and poly (ADP-ribose) polymerase (PARP) inhibition in MCF-7 cells
Vijesh J Bhute1, Sean P Palecek1
1Department of Chemical and Biological Engineering, University of Wisconsin-Madison, Madison, WI 53706, USA.
Abstract:
Genomic instability is one of the hallmarks of cancer. Several chemotherapeutic drugs and radiotherapy induce DNA damage to prevent cancer cell replication. Cells in turn activate different DNA damage response (DDR) pathways to either repair the damage or induce cell death. These DDR pathways also elicit metabolic alterations which can play a significant role in the proper functioning of the cells. The understanding of these metabolic effects resulting from different types of DNA damage and repair mechanisms is currently lacking. In this study, we used NMR metabolomics to identify metabolic pathways which are altered in response to different DNA damaging agents. By comparing the metabolic responses in MCF-7 cells, we identified the activation of poly (ADP-ribose) polymerase (PARP) in methyl methanesulfonate (MMS)-induced DNA damage. PARP activation led to a significant depletion of NAD+. PARP inhibition using veliparib (ABT-888) was able to successfully restore the NAD+ levels in MMS-treated cells. In addition, double strand break induction by MMS and veliparib exhibited similar metabolic responses as zeocin, suggesting an application of metabolomics to classify the types of DNA damage responses. This prediction was validated by studying the metabolic responses elicited by radiation. Our findings indicate that cancer cell metabolic responses depend on the type of DNA damage responses and can also be used to classify the type of DNA damage.
Insights
Cancer cells activate DNA damage response pathways that alter metabolism. This study reveals how specific DNA damage types trigger distinct metabolic changes, offering new ways to classify DNA damage responses using metabolomics.
Area of Science:
- Cancer Biology
- Metabolomics
- DNA Damage Response
Background:
- Genomic instability is a hallmark of cancer.
- Chemotherapy and radiotherapy induce DNA damage, activating DNA damage response (DDR) pathways.
- DDR pathways significantly impact cellular metabolism, but these effects are not well understood.
Purpose of the Study:
- To identify metabolic pathways altered by different DNA damaging agents using NMR metabolomics.
- To investigate the role of poly (ADP-ribose) polymerase (PARP) in methyl methanesulfonate (MMS)-induced DNA damage and its metabolic consequences.
- To explore the potential of metabolomics in classifying DNA damage responses.
Main Methods:
- Utilized Nuclear Magnetic Resonance (NMR) metabolomics to analyze metabolic profiles of MCF-7 cells.
- Administered DNA damaging agents like methyl methanesulfonate (MMS) and zeocin.
- Investigated the effect of PARP inhibition using veliparib (ABT-888).
Main Results:
- Identified activation of PARP and significant NAD+ depletion in response to MMS-induced DNA damage.
- Demonstrated that veliparib (PARP inhibitor) restored NAD+ levels in MMS-treated cells.
- Observed similar metabolic responses to double-strand breaks induced by MMS/veliparib and zeocin, suggesting metabolomics can classify DNA damage types.
Conclusions:
- Cancer cell metabolic responses are specific to the type of DNA damage.
- Metabolomics can be a valuable tool for classifying DNA damage responses.
- Understanding DDR-associated metabolic alterations is crucial for cancer therapy.
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