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High-resolution In Vivo Manual Segmentation Protocol for Human Hippocampal Subfields Using 3T Magnetic Resonance Imaging
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Multiple RF classifier for the hippocampus segmentation: Method and validation on EADC-ADNI Harmonized Hippocampal

P Inglese1, N Amoroso1, M Boccardi2

  • 1Istituto Nazionale di Fisica Nucleare, Sezione di Bari, Italy; Università degli Studi di Bari, Bari, Italy.

Physica Medica : PM : an International Journal Devoted to the Applications of Physics to Medicine and Biology : Official Journal of the Italian Association of Biomedical Physics (AIFB)
|October 21, 2015
PubMed
Summary

This study introduces an automated method using multiple classifiers to segment the hippocampus in MRI scans for neurodegenerative disease research. The approach accurately measures hippocampal changes, aiding in diagnosis.

Keywords:
Alzheimer's diseaseHippocampus segmentationRandom forest classifier

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Area of Science:

  • Neuroimaging
  • Medical Image Analysis
  • Computational Neuroscience

Background:

  • The hippocampus is crucial in neurodegenerative diseases like Alzheimer's Disease.
  • Accurate segmentation of the hippocampus is vital for diagnosing and monitoring these conditions.

Purpose of the Study:

  • To develop and validate a novel, automated method for hippocampus segmentation from structural MRI.
  • To assess the method's robustness and reliability across different subject groups.

Main Methods:

  • A fully automated pipeline involving affine registration, bounding box extraction, and slice-by-slice Random Forest (RF) classification.
  • Fusion of segmentations from three orthogonal directions for improved accuracy.
  • Validation on T1 MRI scans from healthy controls, mild cognitive impairment, and Alzheimer's Disease subjects.

Main Results:

  • The multiple RF classifier approach achieved Dice coefficients of 0.87 ± 0.03, outperforming single RF methods.
  • The method demonstrated robustness and reliability on an external cohort.
  • Preliminary analysis showed local hippocampal morphology differences between subject groups.

Conclusions:

  • A multiple classification approach is effective for automated hippocampus segmentation.
  • This method supports accurate measurement of hippocampal volume and shape changes for diagnostic purposes.
  • The developed pipeline offers a reliable tool for neurodegenerative disease research.