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Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies
Published on: May 6, 2022
Understanding the molecular aspects of oriental obesity pattern differentiation using DNA microarray.
Sun Woo Hong1,2, Jae-Wook Yoo3, Shambhunath Bose4
1Global Research Laboratory for RNAi Medicine, Department of Chemistry, Sungkyunkwan University, Suwon, Gyeonggi-do, 440-746, Republic of Korea. micrornas@gmail.com.
This study explored genomic differences in obesity patterns within Korean individuals, identifying specific gene expression signatures for liver depression syndrome (LDS) obesity. These findings may advance personalized medicine by integrating genomic and traditional oriental medicine approaches.
Area of Science:
- Genomics
- Personalized Medicine
- Oriental Medicine
Background:
- Human constitution in oriental medicine categorizes individuals based on physical, physiological, and clinical traits.
- Obesity is classified into six patterns in oriental medicine, including spleen deficiency, phlegm fluid, yang deficiency syndrome (YDS), food accumulation syndrome (FAS), liver depression syndrome (LDS), and blood stasis syndrome.
- Personalized treatment in oriental medicine is based on identifying individual obesity patterns.
Purpose of the Study:
- To investigate obesity patterns in oriental medicine from a genomic perspective.
- To determine the gene expression signatures of obese patients using peripheral blood mononuclear cells.
Main Methods:
- The study included 23 South Korean obese subjects (BMI ≥25 kg/m²).
- Obesity patterns were identified using a questionnaire and software-guided evaluation.
- Gene expression profiles were analyzed using DNA microarray and quantitative real-time PCR (qRT-PCR).
Main Results:
- Gene clustering revealed disease pattern-specific gene expression upregulation in FAS, LDS, and YDS subjects.
- Specific genes, including prostaglandin endoperoxide synthase 2 and interleukin 8 receptor, alpha, were highly expressed in LDS obesity.
- Quantitative real-time PCR confirmed the upregulation of selected genes in LDS obesity.
Conclusions:
- The study provides a genomic basis for understanding obesity pattern differentiation in oriental medicine.
- Further research can integrate genomic and oriental empirical approaches for personalized medicine development.
- This research contributes to understanding the genomic underpinnings of traditional obesity classifications.
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