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Related Concept Videos

Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

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Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
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Each EDTA molecule has six binding sites: four carboxyl groups and two amino groups. The fully protonated form of EDTA is represented as H6Y2+. However, it can exist in different forms, H5Y+, H4Y, H3Y−, H2Y2−, and HY3−, depending on the pH of the solution. In very basic solutions with pH > 10.17, the fully deprotonated form, Y4−, is the predominant species that readily complexes with metal ions in a 1:1 ratio.
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Related Experiment Video

Updated: Mar 31, 2026

In Vitro Assay for Studying the Aggregation of Tau Protein and Drug Screening
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Tau Aggregation Propensity Engrained in Its Solution State.

Neil A Eschmann1, Thanh D Do1, Nichole E LaPointe1

  • 1Department of Chemistry and Biochemistry and ‡Neuroscience Research Institute and Department of Molecular, Cellular and Developmental Biology, University of California at Santa Barbara , Santa Barbara, California 93106, United States.

The Journal of Physical Chemistry. B
|October 21, 2015
PubMed
Summary
This summary is machine-generated.

Initial solution conditions critically influence tau protein aggregation. Subtle protein-solvent interactions, not just aggregation accelerators, dictate the propensity of tau peptide fragments to form fibrils.

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Area of Science:

  • Biochemistry
  • Protein aggregation
  • Neurodegenerative diseases

Background:

  • Pathological aggregation of tau protein is a hallmark of neurodegenerative diseases.
  • Understanding the early stages of tau aggregation is crucial for developing therapeutic strategies.

Purpose of the Study:

  • To investigate how initial solution conditions affect the conformational states and aggregation propensity of a tau peptide fragment.
  • To determine if early monomer/dimer populations and conformations influence downstream fibril formation.

Main Methods:

  • A spin-labeled tau peptide fragment (R2/G273C-SL) was used.
  • Techniques included transmission electron microscopy (TEM), thioflavin T (THT) fluorescence, ion mobility mass spectrometry (IMMS), electron paramagnetic resonance (EPR), and Overhauser dynamic nuclear polarization (ODNP).
  • Varying solution conditions included osmolytes (urea, TMAO) and different buffers (acetate, phosphate, water).

Main Results:

  • Solution conditions significantly altered early monomer/dimer populations and conformations.
  • These initial peptide characteristics dictated the subsequent fibril formation propensity.
  • Aggregation accelerators like heparin did not override the influence of initial solvent conditions.

Conclusions:

  • The balance between protein-protein and protein-solvent interactions in the initial solution is a critical determinant of tau fibril formation.
  • Early conformational states and populations of tau peptides are crucial for predicting aggregation outcomes.
  • Therapeutic interventions targeting early protein-solvent interactions may offer new avenues for treating tauopathies.