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Published on: May 2, 2025
The application of multi-omics and systems biology to identify therapeutic targets in chronic kidney disease
Katryna Cisek1, Magdalena Krochmal2,3, Julie Klein4,5
1Mosaiques Diagnostics GmbH, Hannover, Germany.
Abstract:
The quest for the ideal therapeutic target in chronic kidney disease (CKD) has been riddled with many obstacles stemming from the molecular complexity of the disease and its co-morbidities. Recent advances in omics technologies and the resulting amount of available data encompassing genomics, proteomics, peptidomics, transcriptomics and metabolomics has created an opportunity for integrating omics datasets to build a comprehensive and dynamic model of the molecular changes in CKD for the purpose of biomarker and drug discovery. This article reviews relevant concepts in omics data integration using systems biology, a mathematical modelling method that globally describes a biological system on the basis of its modules and the functional connections that govern their behaviour. The review describes key databases and bioinformatics tools, as well as the challenges and limitations of the current state of the art, along with practical application to CKD therapeutic target discovery. Moreover, it describes how systems biology and visualization tools can be used to generate clinically relevant molecular models with the capability to identify specific disease pathways, recognize key events in disease development and track disease progression.
Insights
Integrating omics data using systems biology offers a new approach to discovering chronic kidney disease (CKD) biomarkers and therapies. This method models molecular changes for better drug discovery and understanding disease progression.
Area of Science:
- Biomedical Informatics
- Systems Biology
- Genomics and Proteomics
Background:
- Chronic kidney disease (CKD) presents complex molecular challenges for therapeutic target discovery.
- Advances in omics technologies generate vast datasets (genomics, proteomics, metabolomics, etc.).
Purpose of the Study:
- To review omics data integration using systems biology for CKD biomarker and drug discovery.
- To explore the application of systems biology in modeling molecular changes in CKD.
Main Methods:
- Review of omics data integration concepts and systems biology principles.
- Description of key bioinformatics databases and tools.
- Discussion of challenges and limitations in current omics integration.
Main Results:
- Systems biology enables comprehensive modeling of molecular changes in CKD.
- Integration of diverse omics data can identify specific disease pathways and key events.
- Visualization tools aid in tracking disease progression and generating clinically relevant models.
Conclusions:
- Omics data integration via systems biology is a powerful approach for CKD research.
- This approach facilitates the discovery of novel therapeutic targets and biomarkers.
- Systems biology modeling enhances understanding of CKD pathogenesis and progression.
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